Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0966 ATGTCGCTCAGACCAAATGAAAGAACCGAAGGTCGACGCAACCGCTACAAGGTCGCCGTCGACGCCGAAGACGGCCGCCGCAGAAGAGAGGACAACATGGTCGAGATCCGCAAGAACAAGCGCGAGGAGAGCCTTCAGAAGAAGCGTCGCGAAGGCTTCACAGCTCAGCAACAGTTCACATCTCCTACTAACAACCTCGACAAAAAGTTAGAGACTCTTCCTGCACTGGTTGCTGGTGTCTGGTCAGATGATAATTCTACGCAATTGGAAGCCACAACACAATTTCGGCAATTGCTTTCAATTGAGCGGAGTCCTCCAATTGAGGAAGTTATTCAATCGGGTGTCGTGCCACGTTTTATTCAGTTGCTCAGTAGGGAGGATTTCCCTCAAGTTCAGTTTGAGGCTGCATGGGCTCTTACAAACATTGCATCTGGAACTTCTGAGAATACTAAGGTGGTGATTGATCATGGGGCAATTCCTATATTTGTGAAGCTACTCAGTTCACCTAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCACTGGGAAATGTTGCTGGTGACTCCCCTTATTGCCGGGATTTAGTTCTCAGCCAGGGTGCTATGATCCCACTATTGGCCCAGTTGAATGAGCGTGCAAAACTTTCAATGTTGCGAAATGCCACATGGACACTATCAAACTTTTGCCGGGGCAAGCCACAACCTCCGTTTGAGCAAGTGAGGCCAGCACTTCCAGCCCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTCTGACAGATGCTTGCTGGGCACTATCATATCTTTCTGATGGCACAAATGATAAAATCCAAGCAGTTATTGAGGTGGGCGCATGTACCCGATTGGTGCAGCTCCTTCTGCACCCTTCTCCCTCAGTGCTGATTCCTGCTCTTCGCACTGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATTATCAATCACGGTGCACTCCCAAGCCTTTTGAGCCTGTTGACTCATAATCATAAAAAAAGCATCAAGAAGGAAGCTTGCTGGGCTATATCAAATATCACAGCTGGAACCAAGGAACAAATACAGGCTGTTATTGAAGCTGGTCTTATTGGTCCCCTTGTCATTCTTCTTCAAAATGCTGAATTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCAAATGCCACATCTGGTGGTAGCAATGAGCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGAGCTACTTATTTCCCCCGACCCAAGAATTATCACCGTCTGTTTGGAAGGCCTGGAGAATATTCTGAAGGTGGGAGAAGTCGAGAAGTACCTAGGTAACACTGGAGATGTTAACTTGTATGCTCAAATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAATTTGCAAAGTCACGACAACAATGAAATATATGAGAAGGCTGTTAAAATGCTTGAAACATACTGGTTGGAAGATGAAGTTGATGAGACACTACTTCCTGGTTTTGAGCGTGGTTTCAAATTTGGAAGCAATGACCTCCCAGTTCCATCTGGTGGATTCAACTTTCGTTGA 1584 0.4596 MSLRPNERTEGRRNRYKVAVDAEDGRRRREDNMVEIRKNKREESLQKKRREGFTAQQQFTSPTNNLDKKLETLPALVAGVWSDDNSTQLEATTQFRQLLSIERSPPIEEVIQSGVVPRFIQLLSREDFPQVQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLSSPSDDVREQAVWALGNVAGDSPYCRDLVLSQGAMIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEVGACTRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPSLLSLLTHNHKKSIKKEACWAISNITAGTKEQIQAVIEAGLIGPLVILLQNAEFDIKKEAAWAISNATSGGSNEQIKYLVSQGCIKPLCELLISPDPRIITVCLEGLENILKVGEVEKYLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKMLETYWLEDEVDETLLPGFERGFKFGSNDLPVPSGGFNFR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0966 527 Gene3D - 11 50 IPR036975 GO:0006606
Lal7g0966 527 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lal7g0966 527 Pfam Importin beta binding domain 12 93 IPR002652 GO:0006606|GO:0061608
Lal7g0966 527 PANTHER IMPORTIN SUBUNIT ALPHA 2 518 - -
Lal7g0966 527 SMART arm_5 314 355 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 357 397 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 103 144 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 188 229 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 146 186 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 231 270 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 400 440 IPR000225 GO:0005515
Lal7g0966 527 SMART arm_5 272 312 IPR000225 GO:0005515
Lal7g0966 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Lal7g0966 527 SUPERFAMILY ARM repeat 5 496 IPR016024 -
Lal7g0966 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Lal7g0966 527 PIRSF Importin_alpha 2 526 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lal7g0966 527 Pfam Atypical Arm repeat 455 501 IPR032413 -
Lal7g0966 527 Gene3D - 71 494 IPR011989 -
Lal7g0966 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 368 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 358 396 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 242 269 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 315 355 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 189 229 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 146 185 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 273 311 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 400 438 IPR000225 GO:0005515
Lal7g0966 527 Pfam Armadillo/beta-catenin-like repeat 104 144 IPR000225 GO:0005515
Lal7g0966 527 PANTHER IMPORTIN ALPHA 2 518 - -
Lal7g0966 527 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0966 Lal-Chr7 15967116 15971665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0966 129 389 U-box Gene Family AT3G46510 25.758 3.34e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0966 K15042 - gmx:100792804 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0966 7 15967116 15971665 Lal7g0966 7 15967116 15971665 ECH
Lal7g0966 7 15967116 15971665 Lal12g0581 12 4150303 4155549 ECH
Lal7g0966 7 15967116 15971665 Lal13g0626 13 4064269 4069968 ECH
Lal7g0966 7 15967116 15971665 Lal24g0493 24 3468276 3474409 ECH
Lal14g1569 14 16293071 16297025 Lal7g0966 7 15967116 15971665 LSH