Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0957 ATGTGTGGTGGTGCTATCATCTCCGATTTCATCGATGTGAAGTTGAAGCGTGGTCGCAATTTGACCACAAATGATATTTGGTCTCAGCTTGATGCTTTCACTAATTCATCTTCTTCCTCTTCCATTTCCAAATCACTACCACCCAACCTCCTTCAATTCCAAAACAACCAAGTGGTGGAATGTGAGAAGAAAAGCTTGGTTTCAGAGAAGGGGAGATACAAGAGTGAGTCAAAGAAGAGTAAAAGTGAGCGTGTTCGGAAGAACATATACAGAGGAATAAGACAAAGACCATGGGGAAAATGGGCTTCTGAGATAAGAGACCCATACGAAGGTGTTCGAGTATGGCTTGGCACCTTCAACACCGCCGAAGAAGCCGCTCGTGCTTATGATACCGCCGCCAAACGCATCCGTGGAGATAAGGCCAAACTCAACTTCCCTGACGACCCACCCAATCCCAAGAAGCCTAAACTCATCACCACTCCACCCACTCTGCCGCCACTTCCACCACCGCCTGTGGTCCCTCACGCCCAGAGTGGACCCCCTCTTGAGTTGCAGGGCCCACTCTCGAGCCTGGAATTGTTCCTTGGTTTGGACCATGACCAACCTCAGCCCCAGCCCCAGCCTCAGGCTCAAGCTCAGGCTCAAACTCTTGATTTTGAGTGGGACTCCATCTCCTCCTTGGAACCATGG 690 0.5029 MCGGAIISDFIDVKLKRGRNLTTNDIWSQLDAFTNSSSSSSISKSLPPNLLQFQNNQVVECEKKSLVSEKGRYKSESKKSKSERVRKNIYRGIRQRPWGKWASEIRDPYEGVRVWLGTFNTAEEAARAYDTAAKRIRGDKAKLNFPDDPPNPKKPKLITTPPTLPPLPPPPVVPHAQSGPPLELQGPLSSLELFLGLDHDQPQPQPQPQAQAQAQTLDFEWDSISSLEPW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0957 230 Pfam AP2 domain 90 138 IPR001471 GO:0003700|GO:0006355
Lal7g0957 230 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Lal7g0957 230 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Lal7g0957 230 PANTHER DNA-BINDING DOMAIN 1 208 IPR044808 GO:0003700|GO:0009873
Lal7g0957 230 MobiDBLite consensus disorder prediction 140 216 - -
Lal7g0957 230 MobiDBLite consensus disorder prediction 150 177 - -
Lal7g0957 230 MobiDBLite consensus disorder prediction 202 216 - -
Lal7g0957 230 CDD AP2 89 145 IPR001471 GO:0003700|GO:0006355
Lal7g0957 230 PANTHER EREBP TRANSCRIPTION FACTOR 1 208 - -
Lal7g0957 230 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Lal7g0957 230 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Lal7g0957 230 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Lal7g0957 230 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0957 Lal-Chr7 15904786 15906147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0957 1 228 AP2-EREBP Transcription Factor Family AT3G16770 42.264 2.73e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal7g0957 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0957 K09286 - gmx:100817253 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0957 7 15904786 15906147 Lal7g0957 7 15904786 15906147 ECH
Lal7g0957 7 15904786 15906147 Lal19g1111 19 14723538 14724795 LSH