Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0955 ATGGCCGGAAACCAAGAAGGTAAGAAGAAGGTGGCCGTTCTCGGCGTGTCCGCCGTCCTTCTTGTGGCCATGGTGGCCTGCGTTGCCGTGGGTTTAACTCGCGGCGACGAAGGCGGTAGTGAGGAAGAGGGAAAGGGTATTGCAAAAAATCAAAGGAATGTTGATATGGTGTGCCAAGCAGCAGAATACAAAGAAACTTGTCACAAAAGCCTTGAAAAAGCATTAGATAAGGACACTGATTTGAAGGGACTTATCATAGCTGCTTTTAATGCAACTGCTATTGAATTGTCTAAGCAAATTCGTAACAGTACCTTGTATGATGAGTTGGCCAAAGATAGCATGACTAAACAGGCTATGGATGTGTGCAAGGAAGTGTTGGGTTATGCTGTTGATGATGTTCGCAAAACTGTTCATACTTTGGACAAGTTTGATCTTGGCAAGCTCAATGAATATGCATATGACCTCAAGGTTTGGCTCACAGGTACCTTGACCCACCAATACACTTGCTTAGATGCATTTGAGAACACAACCACCGAAGCTGGGCAAACCATGACCAAGGTGCTCAACACTTCAATGGAGCTGAGCAACAATGCTATTGATATAGTGAATGGTTTGTCCCATTTGTTCCAGGGTTTGAACTTGACCTCATTTACCACAAGTATCACCAGTAACACTAACAGGAGGCTTCTCTTTCTTCCCCTGGTGGGTGGCATTGGTTTCCCTTCATGGTTCAATGAAGGCCAAAAGCATTTCATCCGAACTCCTGGACTTGGAAACGTTAAGCCCAATGTAGTTGTTGCTCAAGATGGGTCTGGCCAGTTCACAACACTCACTGATGCTCTTCAAACTGTTCCTCCAAAGAACAGAGAGCCTTATGTGATTTATGTCAAGGCTGGTATCTACAATGAGTATGTTACTTTGACCAAGCATCAAACCCATGTCACTATCATCGGAGATGGTCCCACAAAGACCAGATTCACTGGCAACAAATGTTACAAAAATGGTCTCCAAACTTACTTTACATCTACCTTCAGTGTGAACGCGGCCGGGTTTACTGCGAAGGATGTTGGATTTGAGAACACAGCAGGAGCTGATGGGCATCAAGCAGTGGCACTTCGTGTGACAGCTGATAAGGCAGTATTCTACAATTGTCACATGGATGGTTTCCAAGACACCCTCTACGTGCAATCACAACGCCAATTCTACCGTGACTGTCAAATCACTGGCACCATCGACTTCATCTTTGGAGATGCATTTGGTGTGTTCCAAAACTGCAAGCTAATAGTGAGAAAACCCAACAGTAACCAGAAATGCATTGTTACAGCAGGGGGTAGAAGCAAAGCAGATAGTCTCAGTGCTTTGGTTTTTCAAAGCTGCCAATTCACTGGTGAACCAGCTCTGTTAGATTTGCCTCAAAAGATATCATTCCTTGGAAGGCCATGGAGAAATTACTCAAAAGTGGTTATCATGGATTCTGATATTGATGATATATTCAACCCTGAAGGGTATATGCCATGGGCAGGAAGTGCATTTGAGAGCACATGTACCTATTATGAGTTCCAAAATAGGGGTCTTGGTGCAGATACAAGCAAAAGAGTTAACTGGCCTGGTGTTAAGGTTATTAACCCTATTGAAGCTTTTGATTTCTACCCAGGAATGTTCTTTGAAATCGCTAATGAAACTCAACGTGATAGTTGGATCTTAACTTCTAGGGTTCCTTACAACTTTGGCCCTTTCCCAATTATGCCACTTCCAGATCTACCCATTAAACAGTTTAATTAA 1782 0.4355 MAGNQEGKKKVAVLGVSAVLLVAMVACVAVGLTRGDEGGSEEEGKGIAKNQRNVDMVCQAAEYKETCHKSLEKALDKDTDLKGLIIAAFNATAIELSKQIRNSTLYDELAKDSMTKQAMDVCKEVLGYAVDDVRKTVHTLDKFDLGKLNEYAYDLKVWLTGTLTHQYTCLDAFENTTTEAGQTMTKVLNTSMELSNNAIDIVNGLSHLFQGLNLTSFTTSITSNTNRRLLFLPLVGGIGFPSWFNEGQKHFIRTPGLGNVKPNVVVAQDGSGQFTTLTDALQTVPPKNREPYVIYVKAGIYNEYVTLTKHQTHVTIIGDGPTKTRFTGNKCYKNGLQTYFTSTFSVNAAGFTAKDVGFENTAGADGHQAVALRVTADKAVFYNCHMDGFQDTLYVQSQRQFYRDCQITGTIDFIFGDAFGVFQNCKLIVRKPNSNQKCIVTAGGRSKADSLSALVFQSCQFTGEPALLDLPQKISFLGRPWRNYSKVVIMDSDIDDIFNPEGYMPWAGSAFESTCTYYEFQNRGLGADTSKRVNWPGVKVINPIEAFDFYPGMFFEIANETQRDSWILTSRVPYNFGPFPIMPLPDLPIKQFN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0955 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 205 IPR035513 -
Lal7g0955 593 CDD PMEI-like_3 57 206 - -
Lal7g0955 593 PANTHER PECTINESTERASE 5 581 - -
Lal7g0955 593 Gene3D - 257 577 IPR012334 -
Lal7g0955 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 206 IPR035513 -
Lal7g0955 593 PANTHER PECTINESTERASE 5 581 - -
Lal7g0955 593 SUPERFAMILY Pectin lyase-like 261 554 IPR011050 -
Lal7g0955 593 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Lal7g0955 593 Pfam Pectinesterase 263 554 IPR000070 GO:0030599|GO:0042545
Lal7g0955 593 ProSitePatterns Pectinesterase signature 1. 288 307 IPR018040 -
Lal7g0955 593 TIGRFAM PME_inhib: pectinesterase inhibitor domain 48 205 IPR006501 GO:0004857
Lal7g0955 593 Pfam Plant invertase/pectin methylesterase inhibitor 54 201 IPR006501 GO:0004857
Lal7g0955 593 SMART PMEI_2 49 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0955 Lal-Chr7 15890600 15892676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0955 8 574 Carbohydrate Esterase AT5G49180 42.907 1.55e-168 489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0955 7 15890600 15892676 Lal7g0955 7 15890600 15892676 ECH
Lal14g1559 14 16239920 16241947 Lal7g0955 7 15890600 15892676 LSH