Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0937 ATGTCTTCATCTAGTCCTACGAATCCTTCTTCTTCCACTACAAGGCCTCACACTTATAATCGCAAACAAAAATCATTAGGACTCTTATGCACCAACTTCTTGAACTTGTATAATCGTGATGAGATCCATTTGATTGGTCTTGATGATGCCGCAGCTAGGTTAGGTGTAGAGAGAAGACGGATCTATGATATTGTTAACGTTCTTGAGAGTATTGGTGTTCTTGCGAGAAAGGCTAAGAATCAATACACTTGGAAAGGTTATGCCGCTATTCCTGGTGCTTTGCATGAACTTAAGGAAGAGGCTTTAAGGGAGAGATTAGAGGGTTCACATGGAGTCAATGCAAAAGTTTGGGATGATGAGGATGATGATGAAACCCTGTCCAATTCGGGAAGCCAGAATGACAAGACCATTCCTAATTCTGATGCTCCTAAATCTCAGAAGAATGATAATAGAAGGGAAAAATCCTTGGCGCTGCTTACTCAGAATTTTGTCAAGCTATTTATATGCTCTAATATGGAATTGATCTCCCTTGATGATGCTGCAAAGTTATTGCTTGGGGATGCCCATAGTTCATCCATAATGAGAACGAAAGTACGACGGCTATATGACATTGCAAATGTGTTATCTTCCATGAACCTCATTGAGAAGACCCATACTGCAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGAAAACCAAAGTTCAAATGTCAACAATTCTAGTAAAAGGGTGTTCGGAACTGAAATCACAAATGTTGATTTTAAACGGAATAAGGTGGATGTATTCATAAATGGGGAGTTCAGTCAGAACCCTAAGAGGCAAAAAGAACTGGAACATGTTAGTGGCCTAAGTCAGGTAGATAAAAGCAATTTAAAACAATGCACAAAACAGAGTTCAAGAAGCTACGAGTTTGGTCCTTTTGCTCCAGCCAACATGCACAAAGTTGGAGCCTCTGAGAATAATAGTGTGAAGCAGGTCCATGATTGGGACACCCTTGCAACTGTCCACCGTCCCCATTATCAAAATGAGGCTTTGAAAGAACTCTTCTCACATTACATGGAAGCATGGAAATCGTGGTACTCTGAAGTCGCTGGGAAGAAGCCATTACACATTTTGTAA 1128 0.406 MSSSSPTNPSSSTTRPHTYNRKQKSLGLLCTNFLNLYNRDEIHLIGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGYAAIPGALHELKEEALRERLEGSHGVNAKVWDDEDDDETLSNSGSQNDKTIPNSDAPKSQKNDNRREKSLALLTQNFVKLFICSNMELISLDDAAKLLLGDAHSSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGLKENQSSNVNNSSKRVFGTEITNVDFKRNKVDVFINGEFSQNPKRQKELEHVSGLSQVDKSNLKQCTKQSSRSYEFGPFAPANMHKVGASENNSVKQVHDWDTLATVHRPHYQNEALKELFSHYMEAWKSWYSEVAGKKPLHIL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0937 375 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Lal7g0937 375 SMART E2F_TDP_2 21 86 IPR003316 GO:0005667|GO:0006355
Lal7g0937 375 MobiDBLite consensus disorder prediction 1 20 - -
Lal7g0937 375 MobiDBLite consensus disorder prediction 113 152 - -
Lal7g0937 375 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 366 - -
Lal7g0937 375 Gene3D - 15 88 IPR036388 -
Lal7g0937 375 Gene3D - 145 233 IPR036388 -
Lal7g0937 375 MobiDBLite consensus disorder prediction 129 144 - -
Lal7g0937 375 Pfam E2F/DP family winged-helix DNA-binding domain 22 86 IPR003316 GO:0005667|GO:0006355
Lal7g0937 375 Pfam E2F/DP family winged-helix DNA-binding domain 153 231 IPR003316 GO:0005667|GO:0006355
Lal7g0937 375 PANTHER TRANSCRIPTION FACTOR E2F 8 366 IPR015633 GO:0000978|GO:0006357
Lal7g0937 375 SUPERFAMILY "Winged helix" DNA-binding domain 20 84 IPR036390 -
Lal7g0937 375 SUPERFAMILY "Winged helix" DNA-binding domain 153 232 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0937 Lal-Chr7 15744635 15748421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0937 17 372 E2F-DP Transcription Factor Family AT3G48160 55.795 1.17e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal7g0937 E2F_TDP 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0937 K09391 - gmx:100795252 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0937 7 15744635 15748421 Lal7g0937 7 15744635 15748421 ECH
Lal14g1539 14 16121156 16135165 Lal7g0937 7 15744635 15748421 LSH
Lal7g0937 7 15744635 15748421 Lal19g1097 19 14630549 14634029 LSH