Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0925 ATGGCTATCAGAGGTGTCGATTTTAAGTGGTATGATGGATTTTTCTTGTCTATGCTCGCTACCAGTGTAGTTATTGTGGCGATTAACTGGAAGCGATATCATTCTTGTATGCATCCCTTGCATATATGGATTCTGGTTGATTACACCGTTGTGTTTATTTTCCGGCTTCTGATGTTTGTTGATAATGGCATTGCTGCTGGAATGGGTTTAGATTTTGGGAGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTAGTCATTTCAATTCTTGCAGTGCTTCTCTATCCCTTCCTTTGGATGTGGACTATCATTGGTACACTGTGGTTCAGCCGTGACATGGACTGTGTTCCTGAAGAGGGTCAGAGGTGGGGCTTCCTCATCTGGTTAATTTTTAGCTACTCTGGACTCGTTTGCATTGCTTGCATGTCGGTTGAGAAGTGGATGACACGAAGGCAGGCACACTTATTACGTGCCCAACAGGGTATCCCTGTGTCTGAATATGGGGTTCTACTTGATATGATCCGAGTGCCTGATTGGGCTTTTGAGGCTGCAGGTCAAGAAGCAAGGGGCACAGGCCAAGATGCTGGCGCATATCATCCAGGAGTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCCTTAATTCAGGAACTACCAAAGTTCAGGTTAAAAGCTGTTCCTACTGATTGCAACGAATGTCCTATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTGCCTTGCGCTCACAACTTTCATGTTGAATGCATAGATGAATGGCTTAGTCTAAATGTGAAATGTCCTCGTTGTCGTTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTTTATCCAATCTCCCTTCAGATTCTGAACGACCTTCTGCCAGTGTTGTGACAGCAACCAGATACGTGAGAGGTCAACCTTCTAGTCAAAGTTACACGTTAAGATTACAGGGTCTTCTCCACCCAGTGCGTGCTGAAAATGCAACACCAGCTGATGATACACACAATGCTTTGGAAAATGCTGAGAATGGTGTTGTACCTGTTGTGAGTCGAAATGCTTCAAGTGGACGCCAGGTCTCTTCTGTCGAACGCATGCCTGTCAATATTCCCTCTGTACAAAACTAA 1143 0.4506 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCMHPLHIWILVDYTVVFIFRLLMFVDNGIAAGMGLDFGRQQRYARFCGRVVVISILAVLLYPFLWMWTIIGTLWFSRDMDCVPEEGQRWGFLIWLIFSYSGLVCIACMSVEKWMTRRQAHLLRAQQGIPVSEYGVLLDMIRVPDWAFEAAGQEARGTGQDAGAYHPGVYLTPAQREAVEALIQELPKFRLKAVPTDCNECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLSLNVKCPRCRCSVFPNLDLSALSNLPSDSERPSASVVTATRYVRGQPSSQSYTLRLQGLLHPVRAENATPADDTHNALENAENGVVPVVSRNASSGRQVSSVERMPVNIPSVQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0925 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Lal7g0925 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 IPR044793 GO:0004842|GO:0010182
Lal7g0925 380 SUPERFAMILY RING/U-box 216 284 - -
Lal7g0925 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 - -
Lal7g0925 380 MobiDBLite consensus disorder prediction 358 380 - -
Lal7g0925 380 CDD RING-H2_RNF111_like 234 278 - -
Lal7g0925 380 Pfam Ring finger domain 233 276 IPR001841 -
Lal7g0925 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lal7g0925 380 SMART ring_2 235 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0925 Lal-Chr7 15679833 15684416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0925 58 364 C3H Transcription Factor Family AT3G47990 70.000 2.25e-156 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0925 K16284 - gmx:100812016 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0925 7 15679833 15684416 Lal7g0925 7 15679833 15684416 ECH
Lal7g0925 7 15679833 15684416 Lal17g0923 17 7337426 7342601 PCT
Lal17g0923 17 7337426 7342601 Lal7g0925 7 15679833 15684416 PCT