Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0882 ATGGTTTCAACGAGACGAAATGGATCTCTCTCTGGTAACAGTTCCAAAAGATCTTCTTCTCCACCCGAAGATAAATCTCCTTCACCAAAGCGTCAAAAGGTCGACAATGGCGGTTCGCCGGAGAAACCGATGCCTGTGACGGGAAATTCCAAAGAGTTGCGTACTCCTGAGCCGGCGGCTGATCCCGGAGAATGTGACTCCAGCGTTGTCAAGATTGCCGGAGATGGTGGAACTGATGCTGTGAGTTCAGGCAAAGCTGATGCTACCGCCGCTGCAGCTGTGGCGGCGCCGATTACTGATGGTTCTTCGCTGATTGATAAGTCCAAGCGTGCTTTCTCTTCTTGGATTACAAACCAGAAGCCATGTCCTATATTTGAGAGTCCAGCACCGTGGTGCAGACTCTTGTCACAGTCTGCACAGAACCCAAATGTTGCCATTTGCACGCAGAACTTCACGATTGGTTCTTGTAAAAATTGCAACTTACCATTGAAAGATCAAACTATAAGTGGAAACTTATGCAAGATCAAGCATACCCAGTTGGTGTTGCAGTTCTATTCTGTTTTCTTCAATTATAGAAAATTGTGGGAAAATGCAGCTCACACGGCCGCAATTGCAAAACCTCCAAAAAATATGCTCATTGTTATTTCTGGAAATGATCAGGGCAAGGGAAGTGATGTAGCTTCGCTAGAAAGTACAGGCAGCAAAGGGTCCGTTCTAGTAAATGGGATGCTTGTCAAGAAGAATACCAGCTGTGTTCTTAACTCGGGTGATGAGGTGGTTTTTGGTTTGCTGGGAAATCATTCTTATATTTTTCAGCAACTAAATACTGAGGTTGCAGTTAAGGGTGCAGAAGTCCAGAGTGGTGTTGGTCAATTTCAGCAAATTGAAAGGAGAGCTGGAGATGCTTCAACTATGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAGCCCCAGACAGGACCTCACAAGATTGAAATCTCCAACTGAAAGTTCTAGTAAACCTCACCTGGATGCCTCTAGTCATTCTGTTCTTCATGGTGGTATAGAAATTGAGATTAATGCCTTGGAATCCACTCCAAATGTGCGTAGTGCTAAAGCAGCTGATGTTGGAGCAAGCGAAAAGGATTCACCAATGGATTGCGATCTAGATGCTAGCACAGAGGCAGACAATGTAAAACTCTCTGGGGTATTGGAAGAAATAAATGGGATGCGAGATAGGCAGCCTGCATCGACTTCGAGTAAATCTGTGCGCTGTGCAGTATTTAGAGAAGATGTTCGCGCTGCAATACTGGATGGAAAAGAAATAGATGTGTCTTTTGATAACTTCCCCTATTATTTGAGTGAAAATACAAAAAATGTCCTGGTGGCAGCTTGCTTTATACACCTAAAGCATAAAGTTAAAGAACATGAAAAATACACTGTGAATCTTACAACTATAAACCCTCGTATTCTGCTCTCAGGACCTGCAGGGTCGGAAATCTATCAGGAGATTTTGGCAAAAGCGCTTGCAAAATACTTTGGAACTAAGTTGCTCATATTCGATAGCCATTCACTTTTGGGTGGTTTATCCTCCAAGGAAGCTGCACTACTTAAAGATAGATTTAATGCCGAAAAGTCCCGCAGCACCACCAAACAAAGTCCTACAGCCACAGATTTGGCTAGGAGCATGTATCCATTAGCTAGTGAAACAGATATGCCTAGATCTTCAAATGTACCTACATCATCTGGCCTTGAGTTTCAACTTAAGATGGATACTGATGACATACCAGCTACCTCTGGAACAGCCAAAATTTGCTTGTTTAAATTAGGTGATAGGGTCAAATTTAGCTCTTCATCTTCTTGTGGCTTGTATCAGACATCTTCAAGGTACATATTTGTAGTAAACTCTTCTGAACTGTTTTCTCTTTTACTCATTGATATACATTGTTGTGTACATTTTCTTGCACTTATCTTTGATGGAATATTTATTGGCAATTTCACATATAGGGGCCCGCCTAATGGAAGCCTGGGAAAGGTTGTCTTACTTTTTGATGATAACCCGTTGTCTAAAGTTGGTGTGAGATTTGATAAATCCATACCTGATGGAGTTGATCTTGGAGATGTCTGTGAGGGAGGTCAAGGATTTTTCTGCAAAGTCAATGATCTACAATTGGAAAACAGTGGTGTGGAGGAGCTGGACAAGTTACTTATTGATTCGTTGTTTGAGGTTGTTTACAGTGAGAGCAGAAGTGCACCATTCATTTTATTCATGAAGGATACCGAGAAGTCTGTAATAGGAAATGGAGATACATTCTCGTTTAAAAGCAGGCTTGAAAACCTTCCAGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCAAAAGGAGAAGTCGCAAGCCGGTGGTTTGCTTTTTACAAAATTCGGTAGCAATCATACTGCCCTTCTTGACATGTCTTTCCAGGATGGTTTAGGACGATTGCGTGACAGAGGAAAGGAAGTCCCAAAGCCAAACAAAACTTTGTCTAAGCTTTTCCCAAATAAAATTACAATTCATATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTGGATCAAGATGTCGAAACTCTTAAAGTAGAAGCAAATTTACATCATTTGCGCACAGTTTTGGTCCGTTGTGGAATGGAATGCGAAGGACTTGAGACCTTGTGCATTAAGAACCAGACATTAACGAATGAAGATGCAGAGAAGATAGTCGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCTACAGCTAATCCTGATTCAAAGCTTGTATTGTCTTGTGATAGCATCCAGTACGGAATTGAGATCTTGCAGTCTATACAGAATGAGCCCAAGAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAACGAGTTTGAAAAGAAGCTTTTGGCTGATGTTGTTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTGGAAAATGTCAAGGATACGCTTAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCACAGTTGTTTTGCAAGGGACAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTCGGTGAGGCCGAAAAATACGTGAAAGCTGTTTTCTCTCTGGCTAGTAAAATTGCTCCTAGTGTTATATTTGTGGATGAAGTTGACAGTATGTTGGGCCAGAGGGAAAATTCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGTACAAAGGATACTGAGCGGGTTCTAGTGCTTGCAGCAACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATAAGGAGGCTACCACGAAGATTGATGGTAAAATTGCCAGATTCTCCCAATAGAGCAAAAATTTTGAAAGTTATACTGGCAAAAGAGGAATTGTCCCCTGATATTGATTTGGATGCAATTGCAAGCATGACTGATGGATATTCTGGAAGTGATCTCAAGAATTTATGTGTAGCTGCCGCACACCATCCAATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTAGCCGAAGGTCGACCTGCTCCTTCATTATGTAGTAGTGGGGACATCCGATCTTTAAACAATGGCGACTTCAAATATGCACATCAACAAGTATGCGCAAGTGTTTCCTCCGAATCGGTAAATATGACCGAACTATTACAATGGAATGAACTCTATGGCGAAGGTGGTTCAAGAGTAAAGAAATCTCTTAGCTATTTCATGTGA 3870 0.4217 MVSTRRNGSLSGNSSKRSSSPPEDKSPSPKRQKVDNGGSPEKPMPVTGNSKELRTPEPAADPGECDSSVVKIAGDGGTDAVSSGKADATAAAAVAAPITDGSSLIDKSKRAFSSWITNQKPCPIFESPAPWCRLLSQSAQNPNVAICTQNFTIGSCKNCNLPLKDQTISGNLCKIKHTQLVLQFYSVFFNYRKLWENAAHTAAIAKPPKNMLIVISGNDQGKGSDVASLESTGSKGSVLVNGMLVKKNTSCVLNSGDEVVFGLLGNHSYIFQQLNTEVAVKGAEVQSGVGQFQQIERRAGDASTMAGASILASLSSPRQDLTRLKSPTESSSKPHLDASSHSVLHGGIEIEINALESTPNVRSAKAADVGASEKDSPMDCDLDASTEADNVKLSGVLEEINGMRDRQPASTSSKSVRCAVFREDVRAAILDGKEIDVSFDNFPYYLSENTKNVLVAACFIHLKHKVKEHEKYTVNLTTINPRILLSGPAGSEIYQEILAKALAKYFGTKLLIFDSHSLLGGLSSKEAALLKDRFNAEKSRSTTKQSPTATDLARSMYPLASETDMPRSSNVPTSSGLEFQLKMDTDDIPATSGTAKICLFKLGDRVKFSSSSSCGLYQTSSRYIFVVNSSELFSLLLIDIHCCVHFLALIFDGIFIGNFTYRGPPNGSLGKVVLLFDDNPLSKVGVRFDKSIPDGVDLGDVCEGGQGFFCKVNDLQLENSGVEELDKLLIDSLFEVVYSESRSAPFILFMKDTEKSVIGNGDTFSFKSRLENLPDNVVVIGSHTHTDSQKEKSQAGGLLFTKFGSNHTALLDMSFQDGLGRLRDRGKEVPKPNKTLSKLFPNKITIHMPQDEALLASWKQQLDQDVETLKVEANLHHLRTVLVRCGMECEGLETLCIKNQTLTNEDAEKIVGWALSHHLMQNSTANPDSKLVLSCDSIQYGIEILQSIQNEPKSLKKSLKDIVTENEFEKKLLADVVPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPQLFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEAEKYVKAVFSLASKIAPSVIFVDEVDSMLGQRENSGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVKLPDSPNRAKILKVILAKEELSPDIDLDAIASMTDGYSGSDLKNLCVAAAHHPIKEILEKEKKERAAALAEGRPAPSLCSSGDIRSLNNGDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKSLSYFM 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0882 1289 Pfam ATPase family associated with various cellular activities (AAA) 1025 1154 IPR003959 GO:0005524|GO:0016887
Lal7g0882 1289 MobiDBLite consensus disorder prediction 1 69 - -
Lal7g0882 1289 Gene3D - 1157 1251 - -
Lal7g0882 1289 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 219 615 - -
Lal7g0882 1289 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 78 179 - -
Lal7g0882 1289 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 649 1289 - -
Lal7g0882 1289 SUPERFAMILY SMAD/FHA domain 124 271 IPR008984 GO:0005515
Lal7g0882 1289 ProSitePatterns AAA-protein family signature. 1128 1147 IPR003960 GO:0005524|GO:0016887
Lal7g0882 1289 Pfam AAA+ lid domain 1178 1213 IPR041569 -
Lal7g0882 1289 CDD AAA 1023 1156 - -
Lal7g0882 1289 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 219 615 - -
Lal7g0882 1289 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 649 1289 - -
Lal7g0882 1289 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 78 179 - -
Lal7g0882 1289 MobiDBLite consensus disorder prediction 318 338 - -
Lal7g0882 1289 Gene3D - 126 279 - -
Lal7g0882 1289 MobiDBLite consensus disorder prediction 23 37 - -
Lal7g0882 1289 Gene3D - 983 1264 IPR027417 -
Lal7g0882 1289 MobiDBLite consensus disorder prediction 318 340 - -
Lal7g0882 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1257 IPR027417 -
Lal7g0882 1289 MobiDBLite consensus disorder prediction 1 22 - -
Lal7g0882 1289 SMART AAA_5 1021 1158 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0882 Lal-Chr7 15347215 15359360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0882 984 1228 Calmodulin-binding Proteins AT3G56690 41.270 8.30e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0882 - - aprc:113849024 1806.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0882 7 15347215 15359360 Lal7g0882 7 15347215 15359360 ECH
Lal14g1464 14 15713006 15723247 Lal7g0882 7 15347215 15359360 LSH
Lal7g0882 7 15347215 15359360 Lal17g0855 17 6471076 6482922 PCT
Lal7g0882 7 15347215 15359360 Lal4g0729 4 6057220 6072105 PCT
Lal17g0855 17 6471076 6482922 Lal7g0882 7 15347215 15359360 PCT
Lal4g0729 4 6057220 6072105 Lal7g0882 7 15347215 15359360 PCT