Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0855 ATGATGTCATCATCAGATATAGCAATGGACGGAAGAGGAAAAATCAACAACCACAACAACGACGGTGCTGCTGCTGGTGGTGGTGGTGGAGAAGGTCAAAACGTGATTAATTGCACAGAAGCAGAACAAGCACTTTTCAGAGAGCTATGGCATGCGTGTGCGGGTCCACTTGTTACTGTGCCAAGAGAAGGAGAGCGCGTGTTCTATTTCCCTCAGGGTCATATTGAACAGGTTGAAGCTTCAACTAATCAAGTAGCGGATGAGCATATGCCTGTATATGATCTACGCTCAAAGATCCTTTGTCGGGTCATGAATGTTGTGCTCAAGGCGGAGCCGGATACTGATGAAGTGTTTGCTCAGGTGACCTTAGTTCCTGAGCCAAATCAAGATGAGAATAAAGTTGAAAAAGAGACGCCACCAGCGACGCTGCCAAGGTTTCATGTGCATTCGTTCTGTAAAACCCTGACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCGGTGCTGAGGCGACATGCTGATGAATGCCTTCCTCCTCTGGATATGACAAAGCAGCCACCTACTCAGGAATTGGTGACCAAGGACTTGCATGGGAATGAGTGGCGATTCAGGCATATCTTTCGTGGTCAACCGCGCAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCGAAGAGACTGGTTGCTGGGGATGCATTTATATTTCTAAGGTTTGTGCACTTGCTTGTTGTATTTGCTATTCTATATGGTAATGAAACTAACTTCGGTAATTTCAGAGGTGAGAATGGGGAACTTAGGGTTGGTGTCAGGCGTGCGATGAGGCAACAGGGCAATGTTCCATCGTCAGTTATCTCTAGCCACAGCATGCATCTTGGTGTCCTGGCAACTGCTTGGCATGCTGTCTCCACTGGGACAATGTTCACTGTTTATTACAAACCTAGGACCAGTCCAGCTGAATTTATTGTTCCATATGATCAATACATGAACTCTCTCAAAATTAATTACAACATAGGAATGAGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAAAGGTTTACTGGGACCATTGTTGGAATTGAAGATGCTGACCCCAAAAAGTGGCCTGACTCCAAATGGAGAAGTCTCAAGGTTGTGAGATGGGATGAAACATCTAACATACCACGTCCTGATAGAGTTTCGCCTTGGAAAATAGAGCCTGCTCTGTCTCCTCCTGCTCTTAATCCTCTTTCAATGCCCAGAGCTAAAAGGCCTCGATCTAATGTGGTACCATCATCCCCAGATTCACCTGTTCTTACTCAAGAAGGAGCATCATCTAAAGTAAGCATAGACCCTTTGCCAGCAAGTGGATATCCTAGGGTCTTGCAAGGTCAGGAATTCTCGAGCTTGAGAGGCAATATGGTAGAAAGCAGTGAGCCTGATAATGGCGAGAAGTCTGTTGTGTGGCCACCTGCAGTAGATGATGAAAAGATTGATGCTGTGCCGACTTCAAGAAGGTTTGGACCAGAGGGTTGGATGTCAGTGGGGAGGCACAAAACATATTCAGATCTCCTGTCAGGCTTTGGGACCAACAGAGATCCTTCGCATCTATCCTTGCTTGATCAAAGAGGCCCTCTAGCTAACCCTGCTAAAAAACATTTATTTGATCATGAAGGCAAACTCAATGTGGTAGGTAGTAGTCCATGGTCTGTGATGCCCTCTAGTTTATCATTGGACCTCATGAACTCTAATACAAGAGGTTCTGCACAGGGTGGCAATGCAGCTTATCAAGTTCGAGGGAAATTGTGGTATAGTGCATTTGGTGAATACCCTGTGCTTCATGGTGGTCATAAAGTTGAGCATCAACATGGAAACCTGATGATGCTACCACCACCCACAGCTCAATACGAAAGTCCCTGTTCAAGAGAACTGTTTCCTAAACAAACAGCAGCCAATACTTGTGAAGTTACAAAACCAAAAGATGGAAACTGTAAGCTATTTGGCTTCTCACTTCTTAGTAGCCCCGCTACATGTGGTCCTTCTATGTCGCAAAGAAATGTTGTAAATGAGCCACTTAGTCCCTTGCATATTCCACCAGATCAGCATCATGCTTTTGAAAATGATCAGAAGTCTGAAAATTTGAGGGGCTCTAAACCTGCAGGTGGTTTAGTTGTTGCTGATGACCATGAGAAGCCTTTACTAACTTCTCAGTTGCACCTGAAAGACGTTCAACCCAAACAACACAGTAGTTCTGCTAGGAGCTGCACTAAAGTTCATAAGAAGGGGATTGCGCTTGGTAGGTCTGTGGACCTTACAAAGTTCAGTGGCTATGATGAATTAATTGCTGAGTTGGACCAAGTCTTTGAATTCGGAGGTGAATTAACTTCTCCGAAAAAAGAATGGCTTATTGTCTACACAGATAATGAGGGTGACATGATGCTTGCTGGTGATGATCCATGGCCGGAGTTTTGCGCCATGGTCTGCAAAATGTATATCTACCCAAAAGAGGAGATTCAGAAGATGAACCCGGGTACCCTAAGTTCAAAAAATGAAGAGAATCAGTCAGCTAGAGAAGGTGCAGATGCACAAGAAATTAGATGTCAGCCCCAGCATCCACCTTCCGACACCTGA 2622 0.4516 MMSSSDIAMDGRGKINNHNNDGAAAGGGGGEGQNVINCTEAEQALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLRSKILCRVMNVVLKAEPDTDEVFAQVTLVPEPNQDENKVEKETPPATLPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVTKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRFVHLLVVFAILYGNETNFGNFRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYDQYMNSLKINYNIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKKWPDSKWRSLKVVRWDETSNIPRPDRVSPWKIEPALSPPALNPLSMPRAKRPRSNVVPSSPDSPVLTQEGASSKVSIDPLPASGYPRVLQGQEFSSLRGNMVESSEPDNGEKSVVWPPAVDDEKIDAVPTSRRFGPEGWMSVGRHKTYSDLLSGFGTNRDPSHLSLLDQRGPLANPAKKHLFDHEGKLNVVGSSPWSVMPSSLSLDLMNSNTRGSAQGGNAAYQVRGKLWYSAFGEYPVLHGGHKVEHQHGNLMMLPPPTAQYESPCSRELFPKQTAANTCEVTKPKDGNCKLFGFSLLSSPATCGPSMSQRNVVNEPLSPLHIPPDQHHAFENDQKSENLRGSKPAGGLVVADDHEKPLLTSQLHLKDVQPKQHSSSARSCTKVHKKGIALGRSVDLTKFSGYDELIAELDQVFEFGGELTSPKKEWLIVYTDNEGDMMLAGDDPWPEFCAMVCKMYIYPKEEIQKMNPGTLSSKNEENQSAREGADAQEIRCQPQHPPSDT 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0855 873 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Lal7g0855 873 PANTHER AUXIN RESPONSE FACTOR 2 31 857 - -
Lal7g0855 873 Gene3D - 336 408 - -
Lal7g0855 873 SUPERFAMILY DNA-binding pseudobarrel domain 147 302 IPR015300 -
Lal7g0855 873 MobiDBLite consensus disorder prediction 838 873 - -
Lal7g0855 873 CDD B3_DNA 149 273 IPR003340 GO:0003677
Lal7g0855 873 ProSiteProfiles PB1 domain profile. 750 832 IPR000270 GO:0005515
Lal7g0855 873 SUPERFAMILY CAD & PB1 domains 751 827 - -
Lal7g0855 873 Pfam B3 DNA binding domain 151 238 IPR003340 GO:0003677
Lal7g0855 873 Gene3D - 148 275 IPR015300 -
Lal7g0855 873 Pfam AUX/IAA family 742 832 IPR033389 -
Lal7g0855 873 MobiDBLite consensus disorder prediction 393 449 - -
Lal7g0855 873 Pfam Auxin response factor 299 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal7g0855 873 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 857 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal7g0855 873 SMART B3_2 151 253 IPR003340 GO:0003677
Lal7g0855 873 Gene3D - 745 839 - -
Lal7g0855 873 MobiDBLite consensus disorder prediction 426 444 - -
Lal7g0855 873 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0855 Lal-Chr7 15115099 15119902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0855 2 863 B3 DNA Binding Superfamily AT5G62000 60.225 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal7g0855 B3 1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0855 - - gmx:100815956 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0855 7 15115099 15119902 Lal7g0855 7 15115099 15119902 ECH
Lal14g1425 14 15492135 15497534 Lal7g0855 7 15115099 15119902 LSH
Lal7g0855 7 15115099 15119902 Lal19g1003 19 13905353 13910154 LSH
Lal7g0855 7 15115099 15119902 Lal17g0818 17 6018799 6023878 PCT
Lal7g0855 7 15115099 15119902 Lal4g0686 4 5384525 5389705 PCT