Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0852 ATGCCTTTTCAAGTAATGGATCAGAGGGGTGTTTCTGCCTCATCTCACTTCTTTGACGACATTTCCTTTCAAAGTGAGAGGAATGTTGGACTACAGAAGCAAAAATCTATTCATGATCAATTCCCACGAGGAAAGAATGGAATAGTAGCATCACCTGACAGCACTTTGAGTGATTCATCATCCCTTGGTAGAAATGCAAAATCTAGCTTACAATTGTCACAGACTAGTCTATCTGGAGAAAGTACAGAAAAGCTACATTTTCGTGGAGAAGGCATTGATGTGTTGAAAGATTCCAAGGAATCATCATATTATCATCCCAGATCATGGTCTGATCCGTATATGCAGCCAGCAACTACCTCATATGGTTCAATTGGGGACAAGATTATCACCAACATTGTCCCATGTGAAAGTAGTCTATTCTCCAGCTCTTTGTCTGAAATATTTAGCCAAAAATTGAGGTTGATGGGGAAAGATGTTCTGTCTGATCAGCCCATTACCGTTGATCCTGTTCCTCAAGAAGAACCTTATAAATCTATCGAAGAATACATTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCCGGTGTCACTGATGTGTTAGGATACAACACTCATGCCAGAACAAATGATGACTTTGAAGATTATGATTTGTTTAGCAGTGGTGGGGGCATGGAGCTGGAAGGAGATGAACATCTAACTTCAGGAAATAGAACAAATGGTCTGGATGTAGATTCTGTTTTCCATGGAGGTTCTAAGGTAAAAGTTCCTTTTGGTGAACAACCTTCTCGAACACTTTTTGTGCGAAACATTAATAGCAATGTAGAAGACTCTGAGTTAAAGGTTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATTGCGGCTTTGTTATGATTTCTTATTATGACCTAAGAGCAGCGCAAGATGCAATGCAAGCGCTTCAAAACAGGCCACTGAGGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCACGGTACACTGAAGTTATCTGGTCTTGATTCATATGCTTTAAATGATGAGCTTAAACAGATTTTTGGGTTTTATGGAGAAATTAAAGAAATATATGAATATCCAGAAATGAATCATCACAATTTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCACTGGACAGAATTGGCATTGCTGGGAAGCAGATCAAGCTTGAACCTTACAATCCTAGTCTGGTGCAGCAGTCTTATAAGGGGCAAGGTGATGCCGGTCTTGGTCAAAGTATTATTGACAACTTACCATTAACACATAAGGCAAAAGTGTCTTCTGGAGTACTTGGACCTGGCTGCTTAGGAAATGTATATAATCAGGGATTTCAATCTGCGATGCAGCAAAATTTGAATGCATTTGTTGATAATGCAATCTTTCCATCGAATTCTACCATTCAAAACACAGTGGGAGTGACATCTGCTGCAAAAGTGGCTGGCTTTCGTGAGTCCAGTAACATTGCTGATGCAATGAAATTTGCATCTAGTCCACGATTTCATCCTCATTCCTCACCCGAGTATCATGGTACTTTGCCTCATGGTAGTCCTTATAACTTTTCAAGCACCATTAGAAACATGGGTAGCAATATTGGTACTGCAACAACAGAAGCTTCTGACGGCAGGCACGTCAAGGGAATGGGCTCAATTAGGAACATATCAGAGTATAATGCAGGAGGTCCATCAGGAAATGGAATCCACCCACATAATGGCCTTTATCATATGTGGAATGGCTCCAGTTTGCATCAGAAACCTTCATCAGGTGCCGTGCTCTGGCAGAAAACACCATCATTTGTTAACAGTGCTTGTGCTCCGAGCCTTTCACAGATGCCAAGCTTTTCCCGAACACTACCTAAGATGCCGAGAACACCACATATAGACCATCATGTTGGATCAGCACCAGTTGTTACAGTCTCACCCTGGGAAAGGCAACATTCTTACTTGGGAGAGTCCCCTGAACTTTCTGGTTTTCACTTGGGTTCTTTAGGAAGTGGAGGTTTTCATGGTTCTTGGCAATTGCATCCACCACATTTATCTTCTCACATGTTTTCTCATGTTGGTGGGAATAGCACTGAACTGGCGTCAAATGATGTTCAGAGCTCTCCTAAGCAGATGTCACATATTTTCCCTGGGAGGCATCCTACTTCATTGACAAAATTTGATTTTACCGGTGAACAAATGAGAAATCTTTATCAGCGTAGAAGTGAAGCAAACACTAACAATGCTGATAAAAAACAATATGAACTCGACCTAGGTCGCATATTGCATGGGGAAGACAGCCGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGCCCGGGAAGTTACGATTTTCTATATGAAACACTTCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCCTCACTTGCGTATGGTCGAATTCAAGGAAAAGAGTCTCTTATTGCTCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGATGCCGCCCTATTATCTTTCATACAGATGGCCCAAATGCTGGTGATAGGGAGCCTTTTCCAGTAGGTGCCAATATTAGAACGCGACCCAGAAAATCTTGCACGGGCAGTAGCGAGGAGAACGGTGGCCAAGGAAGTTCTTCAACTCTAGCAAGTGGAGTAGAGACTGCTAATGGAATAGACTCTTAA 2796 0.412 MPFQVMDQRGVSASSHFFDDISFQSERNVGLQKQKSIHDQFPRGKNGIVASPDSTLSDSSSLGRNAKSSLQLSQTSLSGESTEKLHFRGEGIDVLKDSKESSYYHPRSWSDPYMQPATTSYGSIGDKIITNIVPCESSLFSSSLSEIFSQKLRLMGKDVLSDQPITVDPVPQEEPYKSIEEYIIGNLLPDEDDLFSGVTDVLGYNTHARTNDDFEDYDLFSSGGGMELEGDEHLTSGNRTNGLDVDSVFHGGSKVKVPFGEQPSRTLFVRNINSNVEDSELKVLFEQYGDIRTIYTACKHCGFVMISYYDLRAAQDAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLKLSGLDSYALNDELKQIFGFYGEIKEIYEYPEMNHHNFIEFYDVRAAEAALRALDRIGIAGKQIKLEPYNPSLVQQSYKGQGDAGLGQSIIDNLPLTHKAKVSSGVLGPGCLGNVYNQGFQSAMQQNLNAFVDNAIFPSNSTIQNTVGVTSAAKVAGFRESSNIADAMKFASSPRFHPHSSPEYHGTLPHGSPYNFSSTIRNMGSNIGTATTEASDGRHVKGMGSIRNISEYNAGGPSGNGIHPHNGLYHMWNGSSLHQKPSSGAVLWQKTPSFVNSACAPSLSQMPSFSRTLPKMPRTPHIDHHVGSAPVVTVSPWERQHSYLGESPELSGFHLGSLGSGGFHGSWQLHPPHLSSHMFSHVGGNSTELASNDVQSSPKQMSHIFPGRHPTSLTKFDFTGEQMRNLYQRRSEANTNNADKKQYELDLGRILHGEDSRTTLMIKNIPNKYTSKMLLVAIDEQCPGSYDFLYETLQAFNGKKWEKFNSEKVASLAYGRIQGKESLIAHFQNSSLMNEDKRCRPIIFHTDGPNAGDREPFPVGANIRTRPRKSCTGSSEENGGQGSSSTLASGVETANGIDS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0852 931 MobiDBLite consensus disorder prediction 50 82 - -
Lal7g0852 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 423 IPR000504 GO:0003723
Lal7g0852 931 CDD RRM1_MEI2_like 264 339 IPR034453 -
Lal7g0852 931 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 823 - -
Lal7g0852 931 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 826 928 - -
Lal7g0852 931 SMART rrm1_1 351 419 IPR000504 GO:0003723
Lal7g0852 931 SMART rrm1_1 266 334 IPR000504 GO:0003723
Lal7g0852 931 MobiDBLite consensus disorder prediction 877 931 - -
Lal7g0852 931 MobiDBLite consensus disorder prediction 32 83 - -
Lal7g0852 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 417 IPR000504 GO:0003723
Lal7g0852 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 331 IPR000504 GO:0003723
Lal7g0852 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 338 IPR000504 GO:0003723
Lal7g0852 931 Gene3D - 258 349 IPR012677 -
Lal7g0852 931 PANTHER RNA RECOGNITION MOTIF-CONTAINING 826 928 - -
Lal7g0852 931 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 823 - -
Lal7g0852 931 Pfam RNA recognition motif 2 789 823 IPR007201 -
Lal7g0852 931 Pfam RNA recognition motif 2 826 860 IPR007201 -
Lal7g0852 931 Gene3D - 350 437 IPR012677 -
Lal7g0852 931 MobiDBLite consensus disorder prediction 899 931 - -
Lal7g0852 931 SUPERFAMILY RNA-binding domain, RBD 262 422 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0852 Lal-Chr7 15080848 15088933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0852 260 416 Eukaryotic Initiation Factors Gene Family AT3G16380 25.967 3.53e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0852 - - gmx:106798747 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0852 7 15080848 15088933 Lal7g0852 7 15080848 15088933 ECH
Lal14g1422 14 15459404 15467516 Lal7g0852 7 15080848 15088933 LSH
Lal7g0852 7 15080848 15088933 Lal17g0813 17 5949438 5958082 PCT
Lal7g0852 7 15080848 15088933 Lal4g0683 4 5343667 5351907 PCT
Lal17g0813 17 5949438 5958082 Lal7g0852 7 15080848 15088933 PCT
Lal4g0683 4 5343667 5351907 Lal7g0852 7 15080848 15088933 PCT