Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0829 ATGGAAGATGATCATAAGAACCATATTAATTTGCCAAATGGGTTCAATAGTGGAAGCCCTGAAAGTCCATGCTTAAAAACAAACAACAATAACAACAACCATAATAGTAATAAGGAACAAGATCGTTTTCTCCCTATAGCCAACGTTGGTAGAATCATGAAAAAAGTGATTCCTGCTAATGGAAAAATCTCTAAGGATGCAAAAGAGACTGTACAAGAATGTGTATCTGAGTTCATAAGTTTTGTAACAGGAGAAGCTTCTGATAAATGTCAAAGAGAGAAGAGAAAGACGATCAATGGTGACGATGTCATATGGGCTATCACAACCTTAGGGTTTGATGATTATGTTGAACCATTGAAAATCTACCTTCAGAAATATAGAGAAATTGAAGGAGAGAAACTTAATGTTCCAAAGCAACAACGTTCTGAACAAAGACTACATCAACATCATAGCCAAGATGAAAATAATCAATCATTAAATGGTAGTTTATATTCTTCAGCAACTCTCATTTCTCAATCTCCTTATGTGGCTACAGATCAATCATTTTCACAACCATTCTCACCAAATTCAATTCAGAAACAGTTACGACCGCAAGACCAGATTGACTCATTGGGGCATTGGTATGAGTAA 630 0.354 MEDDHKNHINLPNGFNSGSPESPCLKTNNNNNNHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFDDYVEPLKIYLQKYREIEGEKLNVPKQQRSEQRLHQHHSQDENNQSLNGSLYSSATLISQSPYVATDQSFSQPFSPNSIQKQLRPQDQIDSLGHWYE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0829 209 MobiDBLite consensus disorder prediction 1 40 - -
Lal7g0829 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Lal7g0829 209 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal7g0829 209 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 6 198 - -
Lal7g0829 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 198 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal7g0829 209 MobiDBLite consensus disorder prediction 137 160 - -
Lal7g0829 209 Gene3D Histone, subunit A 30 162 IPR009072 GO:0046982
Lal7g0829 209 SUPERFAMILY Histone-fold 40 157 IPR009072 GO:0046982
Lal7g0829 209 MobiDBLite consensus disorder prediction 10 40 - -
Lal7g0829 209 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lal7g0829 209 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lal7g0829 209 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Lal7g0829 209 MobiDBLite consensus disorder prediction 137 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0829 Lal-Chr7 14937549 14938178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0829 14 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 62.500 3.91e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal7g0829 CBFD_NFYB_HMF 6.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0829 K08065 - gmx:100778216 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0829 7 14937549 14938178 Lal19g0953 19 13511705 13512298 LSH