Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0821 ATGGATTCAAGTTCTGGGCAACAGGAATTTGATTATTTGTTCAAGTTATTGATCATTGGAGACTCTGGTGTTGGCAAAAGTAGTTTACTTCTATGTTTCACCACAGATGATTTTCAAGATCTCTCACCTACAATTGGTGTTGATTTTAAGGTCAAATATATGATGATGGGTGGTAAAAAGCTGAAGCTTGCCATTTGGGATACAGCTGGTCAGGAGAGATTCAGAACACTGACAAGTTCTTACTACCGAGGGGCACAAGGGATCATTATGGTTTATGATGTAACCCGACGAGAAACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAGTAGACCTTTATTCAACAAATCCTGACTGCATCAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGCTGACAAAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCCAGAGAATGTGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGA 501 0.3872 MDSSSGQQEFDYLFKLLIIGDSGVGKSSLLLCFTTDDFQDLSPTIGVDFKVKYMMMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEVDLYSTNPDCIKMLVGNKVDKEADKVVTKKEGIDFARECGCLFIECSAKTRVNVQQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0821 166 ProSiteProfiles small GTPase Rab1 family profile. 9 166 - -
Lal7g0821 166 SMART rab_sub_5 14 166 - -
Lal7g0821 166 PANTHER DRAB5-RELATED 1 166 - -
Lal7g0821 166 TIGRFAM small_GTP: small GTP-binding protein domain 12 165 IPR005225 GO:0005525
Lal7g0821 166 ProSiteProfiles small GTPase Rho family profile. 7 166 - -
Lal7g0821 166 CDD Rab18 14 166 - -
Lal7g0821 166 SMART ras_sub_4 11 166 - -
Lal7g0821 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 165 IPR027417 -
Lal7g0821 166 PANTHER SMALL GTPASE FAMILY RAB PROTEIN 1 166 - -
Lal7g0821 166 PRINTS Transforming protein P21 ras signature 14 35 - -
Lal7g0821 166 PRINTS Transforming protein P21 ras signature 36 52 - -
Lal7g0821 166 PRINTS Transforming protein P21 ras signature 54 76 - -
Lal7g0821 166 PRINTS Transforming protein P21 ras signature 118 131 - -
Lal7g0821 166 PRINTS Transforming protein P21 ras signature 153 166 - -
Lal7g0821 166 Pfam Ras family 15 166 IPR001806 GO:0003924|GO:0005525
Lal7g0821 166 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 16 29 IPR025662 -
Lal7g0821 166 Gene3D - 1 166 IPR027417 -
Lal7g0821 166 SMART rho_sub_3 16 166 IPR001806 GO:0003924|GO:0005525
Lal7g0821 166 ProSiteProfiles small GTPase Ras family profile. 6 166 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0821 Lal-Chr7 14907413 14913214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0821 15 166 EF-hand Containing Proteins AT5G27540 26.875 9.87e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0821 K07910 - gmx:100779729 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1376 14 15146358 15161194 Lal7g0821 7 14907413 14913214 LSH
Lal7g0821 7 14907413 14913214 Lal4g0633 4 4697959 4702031 PCT
Lal4g0633 4 4697959 4702031 Lal7g0821 7 14907413 14913214 PCT