Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal7g0808 | ATGTATGCTTCTACTTCCTTTACTTCACACTTCGTCCATGAACTTCTTGGGCACTCCCACTCAAGAAAGTTACTCCTTCAAAATCCACTTAATCAAACAAATGCCCCAGAACCTTCCATTAACAGCCACAACTCAACAAATCTATATCTAGAAGGCCATAACTTTGATGCAGATGTTGTTATGATACTCTCAGTCCTACTGTGTGCTGTTATTTGCTCATTAGGGTTGAACTTCATCATAAGGTGTGCTTTTAGGTATTCAAATTTAGTCATTAATATTGACTCATCATCATCCAACCCTTCACCAAAATTAGCCAACATAGGAATCAAGAAGAAAACTCTTAAGACTTTCCCTATAGTGACCTACTCAGCTGAGATGAACCTTCCAAGTTTGGATACTGAGTGTGTGATATGTCTCTCAGAGTTTGCCAATGATGATAAAGTGCGACTTTTACCAAAGTGCAACCATGGTTTCCATGTTCCTTGCATTGATAAATGGCTTAGTTCACACTCATCTTGCCCTAAGTGCAGACAGTGCCTCACTGAGACTTGCCCCAAGATTGTTAGATCACAACCTGGACGTGTAGTACCACTTCCAGTGCCAGAAACCATTATAAGGATTGACTCACTTGAGCCAGAAGGTTTGGAGGGAAGTGAAGAACTTGTGGAAGCTTGGAGATGGTGTACTAAGCAAAATCCCGAAGAGGACATAGGCACCGTGGATTGA | 726 | 0.4132 | MYASTSFTSHFVHELLGHSHSRKLLLQNPLNQTNAPEPSINSHNSTNLYLEGHNFDADVVMILSVLLCAVICSLGLNFIIRCAFRYSNLVINIDSSSSNPSPKLANIGIKKKTLKTFPIVTYSAEMNLPSLDTECVICLSEFANDDKVRLLPKCNHGFHVPCIDKWLSSHSSCPKCRQCLTETCPKIVRSQPGRVVPLPVPETIIRIDSLEPEGLEGSEELVEAWRWCTKQNPEEDIGTVD | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal7g0808 | 241 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 217 | IPR044602 | GO:0016567|GO:0016740 | |
Lal7g0808 | 241 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 217 | - | - | |
Lal7g0808 | 241 | Pfam | Ring finger domain | 134 | 177 | IPR001841 | - | |
Lal7g0808 | 241 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 177 | IPR001841 | - | |
Lal7g0808 | 241 | SMART | ring_2 | 135 | 176 | IPR001841 | - | |
Lal7g0808 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 183 | IPR013083 | - | |
Lal7g0808 | 241 | SUPERFAMILY | RING/U-box | 113 | 183 | - | - | |
Lal7g0808 | 241 | CDD | RING-H2_PA-TM-RING | 134 | 177 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal7g0808 | Lal-Chr7 | 14823609 | 14824630 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal7g0808 | 40 | 183 | C3H Transcription Factor Family | AT1G76410 | 45.833 | 3.22e-38 | 130 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal7g0808 | K19040 | - | gmx:100780127 | 288.115 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal7g0808 | 7 | 14823609 | 14824630 | Lal7g0808 | 7 | 14823609 | 14824630 | ECH | |
Lal14g1363 | 14 | 15062742 | 15063416 | Lal7g0808 | 7 | 14823609 | 14824630 | LSH | |
Lal7g0808 | 7 | 14823609 | 14824630 | Lal19g0932 | 19 | 13311265 | 13311933 | LSH | |
Lal7g0808 | 7 | 14823609 | 14824630 | Lal17g0724 | 17 | 5117173 | 5117862 | PCT | |
Lal7g0808 | 7 | 14823609 | 14824630 | Lal4g0616 | 4 | 4538163 | 4538840 | PCT | |
Lal17g0724 | 17 | 5117173 | 5117862 | Lal7g0808 | 7 | 14823609 | 14824630 | PCT | |
Lal4g0616 | 4 | 4538163 | 4538840 | Lal7g0808 | 7 | 14823609 | 14824630 | PCT |