Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0808 ATGTATGCTTCTACTTCCTTTACTTCACACTTCGTCCATGAACTTCTTGGGCACTCCCACTCAAGAAAGTTACTCCTTCAAAATCCACTTAATCAAACAAATGCCCCAGAACCTTCCATTAACAGCCACAACTCAACAAATCTATATCTAGAAGGCCATAACTTTGATGCAGATGTTGTTATGATACTCTCAGTCCTACTGTGTGCTGTTATTTGCTCATTAGGGTTGAACTTCATCATAAGGTGTGCTTTTAGGTATTCAAATTTAGTCATTAATATTGACTCATCATCATCCAACCCTTCACCAAAATTAGCCAACATAGGAATCAAGAAGAAAACTCTTAAGACTTTCCCTATAGTGACCTACTCAGCTGAGATGAACCTTCCAAGTTTGGATACTGAGTGTGTGATATGTCTCTCAGAGTTTGCCAATGATGATAAAGTGCGACTTTTACCAAAGTGCAACCATGGTTTCCATGTTCCTTGCATTGATAAATGGCTTAGTTCACACTCATCTTGCCCTAAGTGCAGACAGTGCCTCACTGAGACTTGCCCCAAGATTGTTAGATCACAACCTGGACGTGTAGTACCACTTCCAGTGCCAGAAACCATTATAAGGATTGACTCACTTGAGCCAGAAGGTTTGGAGGGAAGTGAAGAACTTGTGGAAGCTTGGAGATGGTGTACTAAGCAAAATCCCGAAGAGGACATAGGCACCGTGGATTGA 726 0.4132 MYASTSFTSHFVHELLGHSHSRKLLLQNPLNQTNAPEPSINSHNSTNLYLEGHNFDADVVMILSVLLCAVICSLGLNFIIRCAFRYSNLVINIDSSSSNPSPKLANIGIKKKTLKTFPIVTYSAEMNLPSLDTECVICLSEFANDDKVRLLPKCNHGFHVPCIDKWLSSHSSCPKCRQCLTETCPKIVRSQPGRVVPLPVPETIIRIDSLEPEGLEGSEELVEAWRWCTKQNPEEDIGTVD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0808 241 PANTHER RING-H2 FINGER PROTEIN ATL78 1 217 IPR044602 GO:0016567|GO:0016740
Lal7g0808 241 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 217 - -
Lal7g0808 241 Pfam Ring finger domain 134 177 IPR001841 -
Lal7g0808 241 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Lal7g0808 241 SMART ring_2 135 176 IPR001841 -
Lal7g0808 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 183 IPR013083 -
Lal7g0808 241 SUPERFAMILY RING/U-box 113 183 - -
Lal7g0808 241 CDD RING-H2_PA-TM-RING 134 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0808 Lal-Chr7 14823609 14824630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0808 40 183 C3H Transcription Factor Family AT1G76410 45.833 3.22e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0808 K19040 - gmx:100780127 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0808 7 14823609 14824630 Lal7g0808 7 14823609 14824630 ECH
Lal14g1363 14 15062742 15063416 Lal7g0808 7 14823609 14824630 LSH
Lal7g0808 7 14823609 14824630 Lal19g0932 19 13311265 13311933 LSH
Lal7g0808 7 14823609 14824630 Lal17g0724 17 5117173 5117862 PCT
Lal7g0808 7 14823609 14824630 Lal4g0616 4 4538163 4538840 PCT
Lal17g0724 17 5117173 5117862 Lal7g0808 7 14823609 14824630 PCT
Lal4g0616 4 4538163 4538840 Lal7g0808 7 14823609 14824630 PCT