Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0806 ATGCATACTTCACATTATGTCCATGAACTTCTTGGGGTCTCCCACTATAGGAGGTTACTCCTTCAAAACCTTAACTTATCAACAAACTCAACCAACCAACCAGCTACAATAAACAGCCTCAACTCAACAAATCTATATCTTGGAGGTCATAGTTTTGAATCAAATGTTGTCATGGTACTCTCAGTCCTATTATGTTCTCTTATTTGCTCACTAGGTTTGAACTCCATTGTAAGGTGTGTCTTAAGATGTTCAAACTTAGCCATTCATATTGACTCATCCAGCACAAGTAACCCTCCATCTGGATTAGCCAACACAGGAATCAAGAAGAAAGCTCTTAACACTTTCCCTATAGTGACCTACTCAGCTAGGCTGAATGATCTTTCAAATTTGGACACTGAATGTGTGATATGTCTCTCAGAGTTCATCAATAATGATAAGGTGCGATTTTTGCCAAAATGCAACCATGGTTTCCATGTTCCTTGCATTGATGAATGGCTTAGTTCACACTCATCTTGCCCTAAATGTAGACAATGCCTGATTGAGACTTGCCACAAGATTGTTGGATCACAAGCCACTATGGTGCCAGAAACCATTATTAGAATTGAACCACTTGAGCTAGAAAGTTTTGTGCGTAACTATAGAGTTCCACACTAG 654 0.393 MHTSHYVHELLGVSHYRRLLLQNLNLSTNSTNQPATINSLNSTNLYLGGHSFESNVVMVLSVLLCSLICSLGLNSIVRCVLRCSNLAIHIDSSSTSNPPSGLANTGIKKKALNTFPIVTYSARLNDLSNLDTECVICLSEFINNDKVRFLPKCNHGFHVPCIDEWLSSHSSCPKCRQCLIETCHKIVGSQATMVPETIIRIEPLELESFVRNYRVPH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0806 217 SMART ring_2 134 175 IPR001841 -
Lal7g0806 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Lal7g0806 217 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 214 - -
Lal7g0806 217 SUPERFAMILY RING/U-box 127 181 - -
Lal7g0806 217 PANTHER RING-H2 FINGER PROTEIN ATL78 3 214 IPR044602 GO:0016567|GO:0016740
Lal7g0806 217 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Lal7g0806 217 Pfam Ring finger domain 133 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0806 Lal-Chr7 14816022 14816675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0806 37 185 C3H Transcription Factor Family AT1G76410 47.682 4.15e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0806 K19040 - gmx:100780127 241.506