Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0797 ATGGATTTCGACGAATACGAGTATCTGGAGAAGACAGTGGAGGAGCAGGAAGACAACGATTCCTCCAAGAAGAAGGAGAACGAGAGGAGTTACCGGAAGCGCGATGTCGATGATGATCTCGACGCCGCCGATGACCGCCGCAGGAGCAAGAGGTCCAAGGACGACGACGAGAACGGTTCATCTAAGAAAGATAGGGATAGGAGCAGTAGAGAGAGGGAAAAGGAGAGGGACAGAGATAGGAGCAGCAGAGAAAGAGAGAAAACAAGGGATAAGGATAGGGATAGAGAAAGGAGGGATAGGAGAGATAGGGATAAGGATAGGGACAAGGACAAGGACAAGGAGAAGGAGAAGGAGAAGTATAGGGAGAGGGAAAAGGAACGTGCCGAGCGGAGGGAGAAGGAAAGGGAGAGAGAAAGAGAGGAGAGGGAGAGATCTAGAAGGAGCAGGAGTCGTTCTGAGAGAGAGATCAGAGAACGAGATTTCGAATCGCGAGATGGCCGGAGAGGATTTAGGGATAAGAAAGAGGCCGCAGAGCCTGAGGCAGACCCAGAAAGGGACCAAAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGCTAACATTTTCTTTATATGAGTCAGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTGCATCTCTTTGCTGCATGCTTTGTATATTGAATTTTATGATGCGATGTCAGTGCCGATGGCAATTGCTCTCTCTGGCCAACTTCTTTTTGGGCAACCTGTAATGGTCAAACCTTCTGAGGCTGAGAAAAATCTTGTTCAATCTACTGCTACCAGTGGAGCTGCTGGTGTGGTAGGACCATATGGAGCTGTGGACCGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCGGTGGAGGTTGTGCAGCTTCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGATTTATCCAATTTGCCCAACTTGAGCATGCCAAAGCAGCCCAAAGTTTAAATGGAAAGTTGGACATTGCTGGAAGGATTATCAAGGTTTCATCTGTAACTGATCATGTTGGAAACCAAGATACAACTGCAAAATCTACTGACTTTGATGATGATGAAGGTGGAATGGTTTTAAATGCGCAATCAAGAGTAGAACTTATGCGTAAGCTGGCTGGTGATGCTGCGAGTGCTGGTGTCCCCATGGTGAATGGGTCAGCTCCTGCCGCTATTAGCTTGCCTATTGGTAATCTGGGAACAGTGCCTGCAACAGCCTTCCCATCACTAGTTATTCCTACTCCAGTGGCAGAACCTGAAGGAATCCCTAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAAACACTGAGATGGAGCCAGATTTTGATTTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAGTATGGCCGGGTGAAACATATTTATGTCGACAAAAGAAGTGCCGGTTTTGTGTATTTGCGGTTTGAAACAGTGAAAGCATCAAGTGACGCTCAACGTGCAATGCACAACAGATGGTTTGCTCGCAGATTGATTTCAGCTATCTTCATGCAACCTCAGGAATATGAAGCCAAGTTTAAAGGGGAATCTTGA 1755 0.4621 MDFDEYEYLEKTVEEQEDNDSSKKKENERSYRKRDVDDDLDAADDRRRSKRSKDDDENGSSKKDRDRSSREREKERDRDRSSREREKTRDKDRDRERRDRRDRDKDRDKDKDKEKEKEKYREREKERAERREKEREREREERERSRRSRSRSEREIRERDFESRDGRRGFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGLTFSLYESDTSKETQLELSALEFLFPCISLLHALYIEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSTATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFIQFAQLEHAKAAQSLNGKLDIAGRIIKVSSVTDHVGNQDTTAKSTDFDDDEGGMVLNAQSRVELMRKLAGDAASAGVPMVNGSAPAAISLPIGNLGTVPATAFPSLVIPTPVAEPEGIPSECLLLKNMFDPNTEMEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVKASSDAQRAMHNRWFARRLISAIFMQPQEYEAKFKGES 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0797 584 Coils Coil 113 155 - -
Lal7g0797 584 TIGRFAM SF-CC1: splicing factor, CC1-like family 267 580 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lal7g0797 584 Gene3D - 485 584 IPR012677 -
Lal7g0797 584 SUPERFAMILY RNA-binding domain, RBD 180 301 IPR035979 GO:0003676
Lal7g0797 584 Gene3D - 320 416 IPR012677 -
Lal7g0797 584 CDD RRM2_RBM23_RBM39 326 398 - -
Lal7g0797 584 Gene3D - 110 308 IPR012677 -
Lal7g0797 584 MobiDBLite consensus disorder prediction 1 188 - -
Lal7g0797 584 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 417 508 IPR029123 -
Lal7g0797 584 SUPERFAMILY RNA-binding domain, RBD 324 576 IPR035979 GO:0003676
Lal7g0797 584 SMART rrm1_1 189 295 IPR000504 GO:0003723
Lal7g0797 584 SMART rrm1_1 491 569 IPR000504 GO:0003723
Lal7g0797 584 SMART rrm1_1 325 398 IPR000504 GO:0003723
Lal7g0797 584 CDD RRM1_RBM39_like 189 295 - -
Lal7g0797 584 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 267 584 - -
Lal7g0797 584 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 233 - -
Lal7g0797 584 CDD RRM3_RBM39_like 489 571 - -
Lal7g0797 584 PANTHER CC1-LIKE SPLICING FACTOR 1 233 - -
Lal7g0797 584 PANTHER CC1-LIKE SPLICING FACTOR 267 584 - -
Lal7g0797 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 299 IPR000504 GO:0003723
Lal7g0797 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 232 IPR000504 GO:0003723
Lal7g0797 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 566 IPR000504 GO:0003723
Lal7g0797 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 393 IPR000504 GO:0003723
Lal7g0797 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 402 IPR000504 GO:0003723
Lal7g0797 584 MobiDBLite consensus disorder prediction 15 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0797 Lal-Chr7 14752652 14759917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0797 296 397 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 1.28e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0797 K13091 - gmx:100802446 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0797 7 14752652 14759917 Lal7g0797 7 14752652 14759917 ECH
Lal7g0797 7 14752652 14759917 Lal17g0703 17 4970998 4977449 PCT
Lal17g0703 17 4970998 4977449 Lal7g0797 7 14752652 14759917 PCT