Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal7g0726 | ATGGAGATTCATTACAGTCAGAGTTACTTTGAAAAACGTCCAATCATCAAATCCAAGGCTCCTGCAGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCAACTGGGGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCTTGAAGGCCTTGAAAGAAAAGGAAAAAGAGCCATCAGCGCCCGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTAGTGCATTGAGGAAGCATTCTCACATCCACGGAGAGCGGCAATATGTTTGCCACTATGAGGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAACGACACTTTCTCATTCATACAGGGGAAAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTAGATTTCAACCTGAGGTCTCACATGAAAACGCATTCACAACAGAACTATCATATCTGCCCATACCCAGACTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATCGCATCTCATCATGAAAAGAATCCATCAGTGGATGTGGCTTCTGTGAGTCATGTGACAAAGTACACTCCACCTTCAGAAAAGCAAACAAAAACTAAACATTCCGGAGGAGCATATGGTTCGGCATCATCTGATCGCCCTTACGCTTGTCCTTATGAAGGGTGTGAGAAAGCATACATCCATGAATACAAGCTTAAACTCCATTTGAAAAGGGAGCATCCCGAGCATGACGAGCATGCTCAGACTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCTTATGGTGGTGGGAAACGTTCAAACGGTAAAGTTCAGAAGCAAAGTAAGCCCAGACCAAACCTGAAGTTGCCTCAGTCAAAAGTTGCAAAACGCAAAGGGTCCTCCACTCCCTCTATTGCCACTTTAGCTGTTATAGCTAAAAAACCTTGGCCTGTGAAAGAGGAAACATACGATGAAGAAGATAGCGAAGAGACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAAAAAACAACGAAGAAGACGATGAAGAAACAGAATATGAAGACTGA | 1128 | 0.4335 | MEIHYSQSYFEKRPIIKSKAPAVKWVKEWVPQDVVATGGKCMLLRWVTEDTLKALKEKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDASALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQQNYHICPYPDCGKRYAHEYKLKNHIASHHEKNPSVDVASVSHVTKYTPPSEKQTKTKHSGGAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPEHDEHAQTNADNEMDEASDQDAYGGGKRSNGKVQKQSKPRPNLKLPQSKVAKRKGSSTPSIATLAVIAKKPWPVKEETYDEEDSEETEEDRDNVEDGWRYAKNNEEDDEETEYED | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal7g0726 | 375 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 4 | 375 | - | - | |
| Lal7g0726 | 375 | MobiDBLite | consensus disorder prediction | 338 | 352 | - | - | |
| Lal7g0726 | 375 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
| Lal7g0726 | 375 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - | |
| Lal7g0726 | 375 | Gene3D | Classic Zinc Finger | 164 | 195 | - | - | |
| Lal7g0726 | 375 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
| Lal7g0726 | 375 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
| Lal7g0726 | 375 | SMART | c2h2final6 | 234 | 259 | IPR013087 | - | |
| Lal7g0726 | 375 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Lal7g0726 | 375 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
| Lal7g0726 | 375 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Lal7g0726 | 375 | SUPERFAMILY | beta-beta-alpha zinc fingers | 229 | 258 | IPR036236 | - | |
| Lal7g0726 | 375 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Lal7g0726 | 375 | Gene3D | Classic Zinc Finger | 203 | 279 | - | - | |
| Lal7g0726 | 375 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 169 | IPR036236 | - | |
| Lal7g0726 | 375 | MobiDBLite | consensus disorder prediction | 208 | 225 | - | - | |
| Lal7g0726 | 375 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
| Lal7g0726 | 375 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
| Lal7g0726 | 375 | PANTHER | BNAA03G13270D PROTEIN | 4 | 375 | - | - | |
| Lal7g0726 | 375 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
| Lal7g0726 | 375 | MobiDBLite | consensus disorder prediction | 208 | 232 | - | - | |
| Lal7g0726 | 375 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 236 | 259 | IPR013087 | - | |
| Lal7g0726 | 375 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 234 | 264 | IPR013087 | - | |
| Lal7g0726 | 375 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
| Lal7g0726 | 375 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
| Lal7g0726 | 375 | Pfam | Zinc finger, C2H2 type | 79 | 101 | IPR013087 | - | |
| Lal7g0726 | 375 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
| Lal7g0726 | 375 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
| Lal7g0726 | 375 | MobiDBLite | consensus disorder prediction | 259 | 375 | - | - | |
| Lal7g0726 | 375 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
| Lal7g0726 | 375 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
| Lal7g0726 | 375 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal7g0726 | Lal-Chr7 | 14185282 | 14189846 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal7g0726 | 7 | 361 | C2H2 Transcription Factor Family | AT4G06634 | 64.456 | 9.07e-143 | 408 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Lal7g0726 | zf-C2H2 | 0.0089 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal7g0726 | - | - | lang:109362995 | 670.618 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal14g1256 | 14 | 14365505 | 14370250 | Lal7g0726 | 7 | 14185282 | 14189846 | LSH |