Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0704 ATGGATGAAGCTCCGGGCAGTTCGAGTTCCCTGCCTCCGTTCCTGGCAAAGACTTATGAGATGGTTGATGATCCATCATCGGTTTCCGTTGTTTCCTGGAGTGCAAATAGTAAAAGTTTTGTTGTGTGGAATCCTCTAGAATTCGCGAGGGATTTGCTGCCAAAGTTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAACACATATGGCTTTAGGAAAATTGATCCTGAACAATGGGAATTTTCAAATGATGATTTTGTAAGAGGGAAACCACATCTTATGAAGAATATCCGAAGACGAAAGCCGGTTCATAGTCATTCTTTACATAATATCCAATCACAAGTCCCGTTAGTGGACTCAGAAAGGCAGAGTCTAAAAGATGAGATAGAGAAACTTAAACATGGTAAACAATTACTTCTTATGGAATTACGGAGATGTGAACATGAGTGGCAAACATATGAGATACAAATACATTGCTCAAAAGATCGTTTGGAAAAATTGGAACAAGCACAACAAAAGATGCTCTCTTCCATTTCTGAAGTATTGCAGAAACCTGGGAGTGCCTTAAAAATCTGGTCACTGACAGAATTTGTGGATAGAAAACGAAGGTTGCCAAGAAGTGGCTACTTTAGTGATGATGCTAGCATGGAAGATGCTGTTGAAACTTCAGGAACCAGAGAAAATGCAGAAAGTACCTCGGGTTTGACTTTAAACATGGAGCATTTGGATCAGCTTGAGTCATCCTTGGTAGTTTGGGAGAATATTGCAAATTTGGTTGGTCGTACCTTTTTTCATGTTCTTCCAAACTTGGATTTTGATGAATCTACAAGTTGTGCTGTTAGTCCATCTATATCTTGTGAGAAACTAGACGTTGAAGTTCAGCCTACATCTTCTGGAATTGACATGAACTCTGAGCCAGCCGCAGCCGCAGCTGCTGCTCCTGAGTCTGTTGCATCAAAAGAACAACCTGCAAGAAAAGCTGCTGTGGCAACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCGGAAGCTCAGGAAGTGCAATCAGAAAGAAAGGATTACGATGGCAGAAAGAGCGAAGGCAAATTTTGGCGGATCACAAATAGCCTTCCAGAACAGATGGGGCACGTTAGTCAAGCAGAGAAAACTTAG 1182 0.412 MDEAPGSSSSLPPFLAKTYEMVDDPSSVSVVSWSANSKSFVVWNPLEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFSNDDFVRGKPHLMKNIRRRKPVHSHSLHNIQSQVPLVDSERQSLKDEIEKLKHGKQLLLMELRRCEHEWQTYEIQIHCSKDRLEKLEQAQQKMLSSISEVLQKPGSALKIWSLTEFVDRKRRLPRSGYFSDDASMEDAVETSGTRENAESTSGLTLNMEHLDQLESSLVVWENIANLVGRTFFHVLPNLDFDESTSCAVSPSISCEKLDVEVQPTSSGIDMNSEPAAAAAAAPESVASKEQPARKAAVATGVNDVFWEQFLTENPGSSEAQEVQSERKDYDGRKSEGKFWRITNSLPEQMGHVSQAEKT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0704 393 MobiDBLite consensus disorder prediction 299 326 - -
Lal7g0704 393 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal7g0704 393 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal7g0704 393 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal7g0704 393 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 372 - -
Lal7g0704 393 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 372 IPR027725 -
Lal7g0704 393 Coils Coil 167 187 - -
Lal7g0704 393 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal7g0704 393 MobiDBLite consensus disorder prediction 356 370 - -
Lal7g0704 393 Gene3D - 7 104 IPR036388 -
Lal7g0704 393 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal7g0704 393 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Lal7g0704 393 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal7g0704 393 Coils Coil 125 145 - -
Lal7g0704 393 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0704 Lal-Chr7 13986491 13991099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0704 7 393 HSF AT4G18880 50.000 4.36e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal7g0704 HSF_DNA-bind 6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0704 K09419 - gmx:100798004 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0704 7 13986491 13991099 Lal7g0704 7 13986491 13991099 ECH
Lal7g0704 7 13986491 13991099 Lal19g0779 19 11935729 11937688 ECH
Lal14g1226 14 14156139 14158356 Lal7g0704 7 13986491 13991099 LSH
Lal7g0704 7 13986491 13991099 Lal19g0779 19 11935729 11937688 LSH