Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0629 ATGGGAAGGGGAAGAGTAGAGTTGAAGAGAATTGAGAACAAGATCAACAGACAAGTAACTTTTGCAAAACGAAGGAACGGTCTTTTGAAGAAAGCTTATGAGCTTTCCGTACTTTGTGATGCAGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAGACACTAGAGAGGTACCAGAAATGTAACTATGGAGCACCTGAGGCTAATGTTTCTTCAAGGGAAGCTTTGGTAATGGAGTTGAGTACTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAAGCCCTCCAAAGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTTCTCTCAGTAGCAAAGAGCTCGAGTCACTTGAAAGACAGTTAGATTCTTCCTTGAAGCAAATCAGATCAACAAGGTTCAAGCTTGTAAAGAAGTTTTACCTTGATTTGCCTATGCTGGAAATCAAGACCCAGTTCATGCTGGATCAGCTATCTGATCTTCAACGCAAGTTGGAAGGGTATCAAATAAATCAACTCCAATTGAACCCTAGTGTTGAAGATATGGGATATGGCAGGCACCCATGTCATCAAGATCAAGGTGATCACCTCTTTCATCAAATGGAGTGTGAGCCAATATTACAAATTGGATATCAGCATGATCCAGTATCAGTGGTGACAGCAGGACCAAGCATGAATAATTATATGGCAGGATGGTTACCTTAG 744 0.4194 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANVSSREALVMELSTQQEYLKLKARYEALQRSQRNLMGEDLGSLSSKELESLERQLDSSLKQIRSTRFKLVKKFYLDLPMLEIKTQFMLDQLSDLQRKLEGYQINQLQLNPSVEDMGYGRHPCHQDQGDHLFHQMECEPILQIGYQHDPVSVVTAGPSMNNYMAGWLP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0629 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 234 - -
Lal7g0629 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Lal7g0629 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lal7g0629 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 ProSiteProfiles K-box domain profile. 91 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal7g0629 247 Pfam K-box region 93 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal7g0629 247 Coils Coil 128 148 - -
Lal7g0629 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal7g0629 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lal7g0629 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0629 Lal-Chr7 13287411 13298735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0629 1 247 MADS-box Gene Family AT1G24260 73.600 7.75e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal7g0629 K-box 8.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0629 - - gmx:100778931 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1146 14 13595339 13601663 Lal7g0629 7 13287411 13298735 LSH