Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0616 ATGGTGAAGTATTCAAGAGAGCCTGATAATCCCACCAAGTCTTGCAAGGCTAGAGGTGCTGACCTTAGAGTGCATTTTAAGAACACTAGGGAGACAGCGTTTTCCATCAGGAAGCTGCCCTTGGTGAAGGCCAAAAGGTACTTGGAGGATGTTCTTGCCCACAAACAGGCCATTCCATTCCGAAGATTCTGTCGTGGTGTTGGGAGAACAGCCCAGGCAAAGAATAGACATTCTAATGGACAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATTCTTGATTTGCTCAAGAACGCTGAGAGTAATGCTGAAGTGAAAGGGTTGGATGTCGATGCACTTTACATTTCTCACATCCAGGTCAATCAAGCACAGAGGCAAAGGCGTCGTACCTACCGTGCCCATGGAAGAATTAATCCCTACATGTCATCTCCATGCCACATTGAGCTTACACTATCTGAAAAGGAAGAACCTGTTAAGAAAGAGCCTGAGTCTCAGTTGGCACCAAGCAAGAAGAAATCCCAAGCCCTTCGAAGTGGTGCTTCATCTTAA 549 0.4645 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFSIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQRQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPESQLAPSKKKSQALRSGASS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0616 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lal7g0616 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lal7g0616 182 MobiDBLite consensus disorder prediction 153 167 - -
Lal7g0616 182 MobiDBLite consensus disorder prediction 153 182 - -
Lal7g0616 182 Pfam Ribosomal protein L22p/L17e 17 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lal7g0616 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lal7g0616 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lal7g0616 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Lal7g0616 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lal7g0616 182 MobiDBLite consensus disorder prediction 168 182 - -
Lal7g0616 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lal7g0616 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0616 Lal-Chr7 13176571 13178865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0616 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.264 2.36e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0616 K02880 - qsu:112011643 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1344 21 16833347 16835861 Lal7g0616 7 13176571 13178865 PCT
Lal17g1663 17 17861172 17863645 Lal7g0616 7 13176571 13178865 PCT
Lal7g0616 7 13176571 13178865 Lal21g1344 21 16833347 16835861 PCT
Lal7g0616 7 13176571 13178865 Lal17g1663 17 17861172 17863645 PCT