Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0590 ATGGGTCGAAGGAAGATTGAAATTAAGATGGTGAGGGATACAAACACAAGGCAAGTAACATTCTCAAAACGAAGAACAGGTTTATTCAAGAAAGCAAATGAATTATCCATTTTGTGTGGAACTGAAGTTGCTATTGTTGTGTTTTCTCCTGGGAATAAACCCTATTCTTTTGGGCACCCAGATGTTCAATCTGTTGCAGCAAAGTTTCTTGAACAAGAACCAAGATCAAATAATAATGTATCTTCTTCATGTGATTCCAACATGAATATGTTAAATCAACAACTTGCTGAAGTGATGAACCAGTTGCATGAGGAAGAAAAGAAAGGTAAGTTTCATGATGAGGCATTGAATCAATGCAAAAAGAACCAAATTAAGGAGCTTGAAGAATTGCATGATTTAGCTATGGAGCTTAAATGCAATATTAAATCTCGTTTAGATGAGATAGAAGCAGTAGAAACTATGTTACTGATTAAAGAACAACCAGTGGAGTTTGATGAAAACCATGTTTCTAGAAGGAAAAGAAGAAAGATTTAA 534 0.3446 MGRRKIEIKMVRDTNTRQVTFSKRRTGLFKKANELSILCGTEVAIVVFSPGNKPYSFGHPDVQSVAAKFLEQEPRSNNNVSSSCDSNMNMLNQQLAEVMNQLHEEEKKGKFHDEALNQCKKNQIKELEELHDLAMELKCNIKSRLDEIEAVETMLLIKEQPVEFDENHVSRRKRRKI 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0590 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal7g0590 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal7g0590 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal7g0590 177 PANTHER MADS BOX PROTEIN 2 166 - -
Lal7g0590 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal7g0590 177 Coils Coil 117 140 - -
Lal7g0590 177 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Lal7g0590 177 Coils Coil 88 108 - -
Lal7g0590 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal7g0590 177 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Lal7g0590 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 166 - -
Lal7g0590 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0590 Lal-Chr7 12876584 12877117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0590 1 157 Type I MADS-box Gene Family AT2G34440 37.870 1.98e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal7g0590 SRF-TF 9.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0590 - - lang:109342374 199.134