Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0566 ATGGCATCTCTATTAGTGGTTGGTGTCACTTTGTTTCTAAATTCAGTTGTTACAACAACAACAACACTTCACTTTCCTCTCCTTCAAAACAAATACATACTTCTTGTCTCTCTGAATTTCCATTGTTCCTTTCAAACTTGTCTTGTCTTTTCTCTTTTCTGGGCTACTATACCTTCATATATGGCAACTGAAGCTGAACCTACAAGTACCCCAATTCACAAGGATGTAGAGTCAACTGAAATAACTGAAGAACAACCTAGTAGACAACAACAACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCACAAAAAATTTGGATGAAGCAAAAGAGAATATTTTCAGGATAAACACTCCTCCAAAGGGAGAGATTTTCTCCCCTTTATCCACAAGCAATGACTTTCCAGGTCCTTCAATAAAAAATAAACCAACTGTTAAAACAGCCCTTATTCCAAAACTTGGTTTAAAATTTCACATGAGTTCAGATATTGAAAAGGCTTCATCACTAGCACTTGAAGAAGGTTCACCGCCACGAAAAAATCCTACAATTTCAAGGACATTATCTCTTACAAAGTTTATCAGCACCACTAGTGGGAATAAAATGTCTTCCTTACCAATAACTTCAATTGCTCAGTCAAATTCAGAATCTACACATGAAGGGAACGTAGCCTATTCAGCAACATCTGTTAAAAAAGGACAGGAATTACCGATTCATCGCTCCCGTTCAGTTCCTGTGCTTACTAAACTTGGGAACACATCTGTAGGTAGCATGTTTCGTGTAGTTCCAACCACACAGCGGTTCACCGGGAGTATTGCCACAACATCTATGAAATCTCCACCTGATGATACTGTTGAAAATGAGGATGGGGAAGATATTCCCGAAGAAGAAGCTGTATGCAGAATTTGTTTGATTGAATTAGGAGAAGGTGGTGATACACTTAAAATGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAATGTTAAAGGCAATAGAATATGTGATGTGTGCAAAAAAGAAGTTCAGAACCTACCTGTAACACTTCTAAGAGTTCCAAGTGCCCAAGGACTTAACCTTTTAGAAAGCCAGATATCAATACACACAAACAATCCAGAGAGAGAACCAAAGGTTACAATCAAGAAGCAGTGTGCCAAACAATAA 1194 0.3836 MASLLVVGVTLFLNSVVTTTTTLHFPLLQNKYILLVSLNFHCSFQTCLVFSLFWATIPSYMATEAEPTSTPIHKDVESTEITEEQPSRQQQQHGRRKNLILEIPTKNLDEAKENIFRINTPPKGEIFSPLSTSNDFPGPSIKNKPTVKTALIPKLGLKFHMSSDIEKASSLALEEGSPPRKNPTISRTLSLTKFISTTSGNKMSSLPITSIAQSNSESTHEGNVAYSATSVKKGQELPIHRSRSVPVLTKLGNTSVGSMFRVVPTTQRFTGSIATTSMKSPPDDTVENEDGEDIPEEEAVCRICLIELGEGGDTLKMECSCKGELALAHQECAVKWFNVKGNRICDVCKKEVQNLPVTLLRVPSAQGLNLLESQISIHTNNPEREPKVTIKKQCAKQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0566 397 MobiDBLite consensus disorder prediction 76 97 - -
Lal7g0566 397 SMART ringv_2 300 349 IPR011016 GO:0008270
Lal7g0566 397 Pfam RING-variant domain 301 348 IPR011016 GO:0008270
Lal7g0566 397 ProSiteProfiles Zinc finger RING-CH-type profile. 293 355 IPR011016 GO:0008270
Lal7g0566 397 PANTHER OS02G0165000 PROTEIN 69 366 - -
Lal7g0566 397 MobiDBLite consensus disorder prediction 273 292 - -
Lal7g0566 397 SUPERFAMILY RING/U-box 297 352 - -
Lal7g0566 397 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 69 366 - -
Lal7g0566 397 CDD RING_CH-C4HC3_MARCH 301 349 - -
Lal7g0566 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 356 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0566 Lal-Chr7 12639196 12640389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0566 286 355 C3H Transcription Factor Family AT2G37950 36.620 3.81e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0566 - - gmx:100789854 365.155