Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0529 ATGACAGGATTATTAGGAAACAAAGATCTTGTAGATTGTGTTGACCATGATGTTGAGAACTCAAGGACCAAGTTATCAAGATACAATTTTGAGGCTAATAAAGATTACCCAGATGAGAAAAGTGTTGATTTTTTGAGAGATTCAGAAGTGGGTGTTGATAAGATTCTTCAGTTAAAACCCACTGCTACCAAGTTTATTGGTGCTAGCTCAGGGTTTCAGGAACTGACCCTTAGTTACCTTTGTGAAAACCAAAAATTGAGTCTTGCTGAGAGAGAGAAAAGGTTGTTGAATTCCAAGGAAAAAGTGAGTCATAGAGATAAAGAGGTTGTTGATTTTTCTGAGAATTCAAATCAGGATAGAAAATGGGTGGAAAGAGATTTCTTGAGCTTGAGTGAATCCAGAGAGAATTCTTCAAAGAGATCAATTGAAGAAGAAGTTGAAAAAGAAAGTTATAGGGAGAAGAAGCCAAAGTTAGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCATTTTCTCTCACAGCTTCAAATGCTTTGCAGAATGGTGCTGTTGCTGATCAACAACCACTTAGGCCTAAGCCTACAAGGCCTTCAATTACTACTCACACTTCATTCTCAAATGATTGCATTTCACCTTCTTTGTCTTACTCTTATTCTCACCAATTTTCACACAACCCAAGTTGCTCACTGACTCACAAATCAAGTGAGAATTTTGACTATTCAGTCAGCAAAGATGACCCTATTTGGAATTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTCAAGCCAATAGGAGATGGAGGTGTTGCTTTCTCTAATCATGGTGGTTCTGGTGGTGGTTTTAGTTCATTTATGCAAGTTAATATTCAACATAAAACTACTAGTTCAGAAAATCATTCATTTTTCCCTTCTGAATTCCCTGCTAAACCAAGGTTTGAAATTCATTCTGGGGATTCAAGGGGAAGAAGTTCTGAGAATCTGAGAGTGTTGGAATGTTTAGATGTTGGGAAGATAAGGAAGGTTTCTAGGCCAGAGAGAATAGTCAGAGATATTGTTTATGAATCTGTACTTTCTATGGCAGTGACAATTCAGGAGCTAGCTGATGAAGTGATAGCATCAACTAAGGAATATTTGAAGAACCTCATTGAGAAGAGTGACAAGAAAGAGGAATTGGTGAACCTTCAAAACAGTCTTGAGAGAAGATCTGATCTTACTAAGGAGAGTCTTTCAAAGTGCCATAAGGTGCAATTAGAGGTTCTAGTTGCTATCAAGATGGGGCATGCGAGCTTCTTATCCGGTAAAGTTAACTTATCTGAGATGGTAGAGATTTTCTTGTATAGGAGATGTAGAAATGTGAAGTGCAAGAGTGTTGTTCCTGTTGATGATTGTGAGTGCAAGATTTGCTCAGGGAATAAGGGTTTTTGCAGTTCTTGTATGTGTCCTATCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCCACTTGTGGCATTCAGAGAAATCTCATCAAGCCCGGGCCTAGCTTGAAGGGACCTTCGGGGACCTCAGAGGTGCAGTTTCATTGTATTGGCTGTGGACATTCTTCCGAAATGTTTGGGTTCGTTAAAGATGTGTTTGTGTGTTGTGCAAAGGATTGGGATATAGAAACCTTGATGAAAGAGCTTGACTGTGTGAGGAGGATTTTTCGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAGACGGTTTCTCCTATGGATGCCTGCAGCTACATCATACAATTTTTCAGCTATGCCGATAGCATGCCCGACTTTCCTGCTCCTGCGATATCTTCAAGGGACTTGGCAACATCTCAAGCTAACAATTCAAAGGAAACACCATCACTTTCAAAATCTAGTTCTCTAATACGAAAATATCCTTATGACATGAGCTATTCTAGGTCACATCCAGATGCTCATGCGATGTCGAATGATCTTCATCGGAGCGGCCTCAAACATTCCCTCTTGAGTGAATTAAAAACCGAGGCTGATTTCCATTTGGAGGCTTTATTAAGGAAAGGTGGAGTCGAAAGTTTGGAGAGTGTAGTGCGGATAAAGGAGGCCGAGGCGAGAATGTTCCAAACGAAGGCGGATGAAGCGAAGAGAGAGGCAGAAGGATTCCGGAGGATGATCAGGACAAAGACTGAACAGATGGAAGAAGAGTATGCTGAAAAACTCGGCAAGCTGTGTTTGCGTGAAACCGAGGAAAGGCAGAGGAAGAAGTTGGAGGAAATGAAAGTGTTGGAAAATTCTCATTATGATTACTATAAAATGAAAATGAGAATGCAAGATGAGATTTCAGGTTTGTTGGAGAGAATGGAGACAACAAAGCAGCATTGGGTTTAA 2451 0.4031 MTGLLGNKDLVDCVDHDVENSRTKLSRYNFEANKDYPDEKSVDFLRDSEVGVDKILQLKPTATKFIGASSGFQELTLSYLCENQKLSLAEREKRLLNSKEKVSHRDKEVVDFSENSNQDRKWVERDFLSLSESRENSSKRSIEEEVEKESYREKKPKLETLNLSLALPDVSFSLTASNALQNGAVADQQPLRPKPTRPSITTHTSFSNDCISPSLSYSYSHQFSHNPSCSLTHKSSENFDYSVSKDDPIWNCGEGTNGSVHSRFKPIGDGGVAFSNHGGSGGGFSSFMQVNIQHKTTSSENHSFFPSEFPAKPRFEIHSGDSRGRSSENLRVLECLDVGKIRKVSRPERIVRDIVYESVLSMAVTIQELADEVIASTKEYLKNLIEKSDKKEELVNLQNSLERRSDLTKESLSKCHKVQLEVLVAIKMGHASFLSGKVNLSEMVEIFLYRRCRNVKCKSVVPVDDCECKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHSSEMFGFVKDVFVCCAKDWDIETLMKELDCVRRIFRGSEDRKGKELHVKTDDMLLKLQTKTVSPMDACSYIIQFFSYADSMPDFPAPAISSRDLATSQANNSKETPSLSKSSSLIRKYPYDMSYSRSHPDAHAMSNDLHRSGLKHSLLSELKTEADFHLEALLRKGGVESLESVVRIKEAEARMFQTKADEAKREAEGFRRMIRTKTEQMEEEYAEKLGKLCLRETEERQRKKLEEMKVLENSHYDYYKMKMRMQDEISGLLERMETTKQHWV 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0529 816 Pfam Coiled-coil region of Oberon 687 805 IPR032535 -
Lal7g0529 816 Pfam PHD - plant homeodomain finger protein 452 576 IPR032881 -
Lal7g0529 816 PANTHER PROTEIN OBERON 3 31 816 - -
Lal7g0529 816 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 31 816 IPR004082 -
Lal7g0529 816 CDD PHD_OBE1_like 482 541 - -
Lal7g0529 816 Coils Coil 718 752 - -
Lal7g0529 816 Coils Coil 766 786 - -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 365 387 IPR004082 -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 404 419 IPR004082 -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 443 464 IPR004082 -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 489 509 IPR004082 -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 562 581 IPR004082 -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 712 732 IPR004082 -
Lal7g0529 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 751 773 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0529 Lal-Chr7 12245433 12249495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0529 452 608 PHD Gene Family AT5G57380 24.841 1.00e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0529 - - gmx:100820216 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0529 7 12245433 12249495 Lal19g0130 19 1097563 1100874 LSH