Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0461 ATGGTAGCTCAACAATCACAACCTCAGATTCAGTCTCCTACACTTTCTGCACAAGACGATGCTTTGAAGAGAAACACCGATTGTGTCTACTTTCTTGCATCACCTCTCACGTGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAATATGCTCGGGTTAATCCTAGAGATTGCAGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGCTCATTCCGTCATCCGCCTCTTGATAGCCTGTTAGGAACACCGCCAGCCACTGCTTCTGGGCCATCTGTTCCACTGTTACAGCATCCAACACCGTATGCAACACATGCACCATATAATTCTAGTAAACCAGCTGTTCCGTGCATTTTCTTCCAAAAAGGGCTTTGCTTAAAAGGTGACAGATGTGCTTTCTTGCATGGACCACTTCCTAATAATGGTAATAAAGTAGTTACCCAGGACCGAATGAATACCCAAGGAACTGAGACTCAGAGTTTTAAGAAGCCATTTGGAGGCATTGAACAGACTACACAGGAAAGCAAAATTTCCCAAGGGAATGTTGCGAAGCCAGTTAGAGACCTTGAAGGTAAATCTGCCCAAAAAGTTGAAACTGCTCGACAAAGGAATTTTTTTGAGTTGAAGAAGCATGTGCCACCAACATCTGCAGGATTTGAGGACGAGGCTTCAAGATTTAAGATAACAAGTACTCCATCAGTGATCAATGAGCCCACTGTAGTTCGGTCTAGTCATCTGCATCAAGCCTATGTGCCAAATGATCATAGCTTCCACAATGGTAAGGACAGTGATGAGTTTCTCAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTTGCTGATGAACTTAGGAATTCTGATTATTATCACGGGGATGATGAATTTGGCAACGCAAGAGGTGAAGATGAAAGGAACTTGGACTCTTTGAATGAGTATGATCTAGGACATTCTTCTGATTATAGTTTAGTGGCTGGTATTGACCGATATAGACTTCATGTGCCAGAGACATACATGTGGGAGCAGCATAGAAAGCCACCAGCCCATTTGGAAAAAAGGACTCATCGCAGATCTGACAGTCCTAACAATGCTGAGGTCTCAGATCTCCGAATTCATTTATCCAAGCGCAGGAAGGGTAATGGTTTGAAATCTATTGTCACACATGATTATGCTGTTGAAAGACATGGTGAGGAACATGGTTACCGACACTTCTCTAGGAAGGATTCACTCCAGTTACCTTTGAATGAGAGCTCCCTCAGTAATCGCTTTCGAGGACGAATAAAACTCCCAATAAATGGTGGTGATGGTCACCCAGAGAGGGAATCAGACAGAGGAAGAATTAGGCGCAGATTGTCATCTGGAAGGTTACCAGCCCCTCATCAAGGATGGCTTCAAGATAGAATTATAGGACGGGTGCAAGAAGGCGAGAGGAGAAACTTGAGGGATCGACCGGTTGGGAGAGAACTATTGGGGGACAGAACCAATGATTTTTATGCCCCAAAACGTCTTTCTGAAATTAAAAATGGGAGCAGTGAGAATAGGGAGCAACTATTTATGGGAAAGAGAAAAAGTTTAAGGGATCAGCAACAATCTGATGATTTTTTTCAGTTTGAAGGTCCAAAACCTCTTACTGAAATTCTGAAGGAGAAGAAGAGAGGAGTTGGAGCTGGTGCAGCCTCCCAGAGTGGTAGTTCATCTGAGAATAAGAATAGAGAAATTACGAATAACTCAGATCATACATCTCTCGCAAATACACAAAATGGAGCATTGTCTGAGACCATGGAGAATGTCAAGAACTATGAAGAAGAATCCAAGTCTCAGGCCACTGACGCAGTTGGAAAAAGTGCAGATAATATTGATGCAACTCATGGTCAATCATCTGAGGAAGGACTGATCTATGATGAAGCAACGGAGGATCAGGAATACGAAGGTGATGACGGGGAATATGATTATGATCAAGTTGATGAGAGGGACTATGAGTATGAACAAATTGAGGAAGGTGAAAATCCAGAGGAAGAAGAATACATGGATGAAGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTTACATGA 2082 0.4284 MVAQQSQPQIQSPTLSAQDDALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLNGNCLNPKCSFRHPPLDSLLGTPPATASGPSVPLLQHPTPYATHAPYNSSKPAVPCIFFQKGLCLKGDRCAFLHGPLPNNGNKVVTQDRMNTQGTETQSFKKPFGGIEQTTQESKISQGNVAKPVRDLEGKSAQKVETARQRNFFELKKHVPPTSAGFEDEASRFKITSTPSVINEPTVVRSSHLHQAYVPNDHSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGDDEFGNARGEDERNLDSLNEYDLGHSSDYSLVAGIDRYRLHVPETYMWEQHRKPPAHLEKRTHRRSDSPNNAEVSDLRIHLSKRRKGNGLKSIVTHDYAVERHGEEHGYRHFSRKDSLQLPLNESSLSNRFRGRIKLPINGGDGHPERESDRGRIRRRLSSGRLPAPHQGWLQDRIIGRVQEGERRNLRDRPVGRELLGDRTNDFYAPKRLSEIKNGSSENREQLFMGKRKSLRDQQQSDDFFQFEGPKPLTEILKEKKRGVGAGAASQSGSSSENKNREITNNSDHTSLANTQNGALSETMENVKNYEEESKSQATDAVGKSADNIDATHGQSSEEGLIYDEATEDQEYEGDDGEYDYDQVDERDYEYEQIEEGENPEEEEYMDEEDGDDFAKKIGVMLT 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0461 693 MobiDBLite consensus disorder prediction 548 683 - -
Lal7g0461 693 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 5 692 - -
Lal7g0461 693 SUPERFAMILY CCCH zinc finger 114 138 IPR036855 GO:0046872
Lal7g0461 693 Gene3D - 14 80 - -
Lal7g0461 693 Gene3D - 105 177 - -
Lal7g0461 693 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 5 692 - -
Lal7g0461 693 MobiDBLite consensus disorder prediction 632 680 - -
Lal7g0461 693 ProSiteProfiles Zinc finger C3H1-type profile. 22 51 IPR000571 GO:0046872
Lal7g0461 693 Pfam Zinc-finger containing family 23 78 IPR041686 -
Lal7g0461 693 ProSiteProfiles Zinc finger C3H1-type profile. 53 79 IPR000571 GO:0046872
Lal7g0461 693 MobiDBLite consensus disorder prediction 346 367 - -
Lal7g0461 693 SMART c3hfinal6 55 78 IPR000571 GO:0046872
Lal7g0461 693 SMART c3hfinal6 23 50 IPR000571 GO:0046872
Lal7g0461 693 SMART c3hfinal6 114 139 IPR000571 GO:0046872
Lal7g0461 693 MobiDBLite consensus disorder prediction 609 625 - -
Lal7g0461 693 ProSiteProfiles Zinc finger C3H1-type profile. 113 140 IPR000571 GO:0046872
Lal7g0461 693 Pfam RNA-binding, Nab2-type zinc finger 118 138 - -
Lal7g0461 693 MobiDBLite consensus disorder prediction 558 594 - -
Lal7g0461 693 Coils Coil 583 603 - -
Lal7g0461 693 MobiDBLite consensus disorder prediction 426 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0461 Lal-Chr7 10511967 10515580 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal7g0461 zf-CCCH_3 2e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0461 - - lang:109359705 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1050 14 12719923 12723659 Lal7g0461 7 10511967 10515580 LSH
Lal7g0461 7 10511967 10515580 Lal19g0144 19 1221684 1225382 LSH