Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0272 ATGAATCATCCAACATGGTACCATTGCTCTGTCCACCAAAGACAACAACTCCAAAACCTTAAACTCACAGACTCCTTGAGAATTAGAGTCAATGCCCTCATTCGAAATTACCTCCCAATCAATGATCCTAACTCTCATCCACCTATCATAGACACAATACCCATGTTCCAAACCTCTATCACCCCATCCTGCAAACATATCTTCGAAATTAACCATAAAGATTTTCTACGAAGATACTTAGTCAACTCATCATATGCAATCCTCTTAACCTATGGTTCTCAATCTCACATTGAGAACCTATCATGTGAGATAATGGCTCAGCTCCGACAGATTTACATTAGTCATGCTTCAAAGCCTGGATTCACAAAATCATCAGATTCAAGAGTTGAATTGTTTGATTGTGATATAAATATTACCATTGACGTGCCTGTTAATACCACTGATGAAGAGTTGGCCATACAAGAGGAATTGTCCATGCAAGAAAATGTGAAGATGGTTCCCACATCTGATGAAGACTTGCAATCTTTGAAAACATACAAGCTTCCACATCAATGCCAAATATGTTTGGAAAAGTTCTATGCGGAGAAAGAAGATGAAGATATAGAGATCACTATAATGCCATGTGGTCATATGTTTCACCATCACTGTATCATACAATGGCTGCAAATGAGTCACATGTGTCCCTTATGTCGTTGCCCTTTGTCTACCGACAACCAAAGGAAAAAATAA 729 0.3841 MNHPTWYHCSVHQRQQLQNLKLTDSLRIRVNALIRNYLPINDPNSHPPIIDTIPMFQTSITPSCKHIFEINHKDFLRRYLVNSSYAILLTYGSQSHIENLSCEIMAQLRQIYISHASKPGFTKSSDSRVELFDCDINITIDVPVNTTDEELAIQEELSMQENVKMVPTSDEDLQSLKTYKLPHQCQICLEKFYAEKEDEDIEITIMPCGHMFHHHCIIQWLQMSHMCPLCRCPLSTDNQRKK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0272 242 SMART ring_2 185 230 IPR001841 -
Lal7g0272 242 ProSiteProfiles Zinc finger RING-type profile. 185 231 IPR001841 -
Lal7g0272 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 236 IPR013083 -
Lal7g0272 242 PANTHER F6A14.12 PROTEIN-RELATED 76 234 - -
Lal7g0272 242 SUPERFAMILY RING/U-box 184 237 - -
Lal7g0272 242 Pfam Ring finger domain 184 231 IPR001841 -
Lal7g0272 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 234 - -
Lal7g0272 242 SMART ringv_2 184 231 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0272 Lal-Chr7 4463928 4464656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0272 150 239 C3H Transcription Factor Family AT1G18760 31.250 1.63e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0272 - K22378 lang:109350403 393.275