Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0267 ATGAATCATCCAATATGGTACCATTGCTCTGTCCGCCAAGGACATCAACTCCAAAACCTTAAACTCACAGACTCCTTCAGAATTAGGATCAATGTCCTCATTCGAAATTACCATCCAATCAATGATCCTAACTCTCATCCACCTATCATAGACACAACACCCTTGTTCCAAACCTCTATCACCCCACCCTGCAAACATATCTTCGAAATTAACGATAAAGATTTCCTACGAAAATACTTAATCAACTCATCATATACAATCCTCTTAACCTATGGTTCTCAATCTCACATTGAGAACCTATCATGTGAGATAATTGCTCAGCTCCGACAACTATACATTAGTCATGCTTCAAATCATGGAGTCACAGAATCATCAGATTCAAAAGTTGAATCGTTTGATTGTGATATAAATATTATCATTGACGTGCTTGTTAATACCAATGATGAAGAGTTGGCCATACAACAACAATTGTCCATGCAAGAAAATGTGAAGATGGTTCCAGCATCAGATAAAGACTTGCAATCTTTGAAAGCATACAAGCTTCCACACCAATGCCAAATATGTTTGGAAAAGTTCTATGCGGAGAAAGAAGATGAAGATGATGATGTAGAGATCACAATAATGCCATGTGATCATGTGTTTCACCATCAATGTATTATACAATGGTTGCAAACCAGTCACATGTGTCCTTTATGTCGTTACCCTTTCTCTATTGACAATGAAAGAAAATGA 732 0.3702 MNHPIWYHCSVRQGHQLQNLKLTDSFRIRINVLIRNYHPINDPNSHPPIIDTTPLFQTSITPPCKHIFEINDKDFLRKYLINSSYTILLTYGSQSHIENLSCEIIAQLRQLYISHASNHGVTESSDSKVESFDCDINIIIDVLVNTNDEELAIQQQLSMQENVKMVPASDKDLQSLKAYKLPHQCQICLEKFYAEKEDEDDDVEITIMPCDHVFHHQCIIQWLQTSHMCPLCRYPFSIDNERK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0267 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 235 - -
Lal7g0267 243 SUPERFAMILY RING/U-box 184 239 - -
Lal7g0267 243 SMART ringv_2 184 233 IPR011016 GO:0008270
Lal7g0267 243 Pfam Ring finger domain 184 233 IPR001841 -
Lal7g0267 243 PANTHER F6A14.12 PROTEIN-RELATED 78 235 - -
Lal7g0267 243 SMART ring_2 185 232 IPR001841 -
Lal7g0267 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 238 IPR013083 -
Lal7g0267 243 ProSiteProfiles Zinc finger RING-type profile. 185 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0267 Lal-Chr7 4312925 4313656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0267 150 234 C3H Transcription Factor Family AT1G18760 34.066 2.87e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0267 - K22378 lang:109350403 379.022