Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal7g0266 | ATGAATCATCCAATATGGTACCATTGCTCTGTCCGCCAAGGACATCAACTCCAAAACCTTAAATTCACAGACTCCTTCAGAATTAGGATCAATGTCCTCATTCGAAATTACCATCCAATCAATGATCCTAACTCTCATCCACCTATCATAGACACAACACCCTTGTTCCAAACCTCTATCACCCCACCCTGCAAACATATCTTCGAAATTAACGATAAAGATTTCCTACGAAAATACTTAATCAACTCATCATATACAATCCTCTTAACCTATGGTTCTCAATCTCACATTGAGAACCTATCATGTGAGATAATTGCTCAGCTCCGACAACTATACATTAGTCATGCTTCAAATCATGGAGTCACAGAATCATCAGATTCAAGAGTTGAATCGTTTGATTGTGATATAAATATCATCATTGACGTGCTTGTTAATACCAATGATGAAGAGTTGGCCATACAACAACAATTGTCCATGCAAGAAAATGTGAAGATGGTTCCAGCATCAGATAAAGACTTGCAATCTTTGAAAGCATACAAGCTTCCACACCAATGCCAAATATGTTTGGAAAAGTTCTATGCGGAGAAAGAAGATGAAGATGATGATGTAGAGATCACAATAATGCCATGTGATCATGTGTTTCACCATCAATGTATTATACAATGGCTGCAAACCAGTCACGTGTCCTTTATGTCGTTACCCTTTGTCTATTGA | 714 | 0.3768 | MNHPIWYHCSVRQGHQLQNLKFTDSFRIRINVLIRNYHPINDPNSHPPIIDTTPLFQTSITPPCKHIFEINDKDFLRKYLINSSYTILLTYGSQSHIENLSCEIIAQLRQLYISHASNHGVTESSDSRVESFDCDINIIIDVLVNTNDEELAIQQQLSMQENVKMVPASDKDLQSLKAYKLPHQCQICLEKFYAEKEDEDDDVEITIMPCDHVFHHQCIIQWLQTSHVSFMSLPFVY | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal7g0266 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 234 | IPR001841 | - | |
| Lal7g0266 | 237 | SUPERFAMILY | RING/U-box | 184 | 228 | - | - | |
| Lal7g0266 | 237 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 77 | 228 | - | - | |
| Lal7g0266 | 237 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
| Lal7g0266 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 229 | IPR013083 | - | |
| Lal7g0266 | 237 | SMART | ringv_2 | 184 | 229 | IPR011016 | GO:0008270 | |
| Lal7g0266 | 237 | PANTHER | F6A14.12 PROTEIN-RELATED | 77 | 228 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal7g0266 | Lal-Chr7 | 4266984 | 4267697 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal7g0266 | 150 | 227 | C3H Transcription Factor Family | AT1G18760 | 30.952 | 9.82e-08 | 49.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal7g0266 | - | - | lang:109350403 | 350.903 |