Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0189 ATGGCTATTACACCTCATATGTTCACAACCCAAAAACGACGACCCTTTGAGTCGTTTATCCCTAAAAAATTCACAGATTTCAACCTTCTTCACTCTCTTATTCACATCACAAACCAAATTTCTTCATTCAACCCAACCAACTTGTTTCTCCTTAAACGCAGTTCTTGTTCTGTCGTTCATAAAGCAAAGCTTCTCAATGTTCTCTTCGAAGATTTAGTTAGAAATTCTATTCCTCTGTGTTCCAATTCTTTAATCCTCTGCTTCGAAGAAATGTACATCGTGCTACACCAGATTAAAACCCTCATCGAAGATTGTATAAAAGGAAGCAAATTCTCTCTCCTCATGCAAGTTGAAACCGTTGCTGATACTTTTCATATTCTCATAAGAGAACTTTCAACTCTTCTTGATATCTTTTCTGTTCAAGAGCTTGACTTAAACGACGACGTTTTTGAACTTGTAATCCTTATTAGAAAACAGTGCTCTGAATCGAAGATCGTAATAGGAAAAGAAGAAACGAAGCTACGAAACGATATCGTTTTGGTTATCGAGCGGATCAAGAACGAGATAGTTCCTGATAAATCAAAAATCGCTGAGATCTTTTCCAAGTTGGAGATTCGTGATTCTTCAAGTTGCAGAACGGAGATTGAAGCTTTGGAGAAAGAGATTCATAATTGGATCGATGAACGATCGAAATTGGAGATCGTAGCGTTGATCGGGCTTGTTCGTTATACGAAATGTGTTCTCTTCGGAGCATCAACACCTTCTTCATCGAAAGAGGTTTCACGGCGGAAACAACCGTCAGAGGTGGTTGCTCCGGTGGATTTCCGGTGTCCAATAAGTTTAGAGTTAATGCAAGACCCTGTTGTCGTGGCAACAGGACAAACGTACGATCGAAATTCCATTAAGCTTTGGATGGATTCTGGACATAACACGTGTCCCAAAACAGGTCAAAAACTGATCCACACGGAACTCATACCAAATCGTGCACTGAGGAACATAATAGCTATATGGTGCCGCGAACAGAAGATCCCATTCGAAGGTGAATCAGTTAACGGAAAACTTAACGACCGTTTAACTAACAAAGCAGCGTTGAAAGCTACAAAAATGACGGCGTTATTTTTAGTTGAGAAGCTTAAGTTTCATGTAGAGGTTTCTGATTCTAGTAATGAAGAGTTAAACGGTGTCGTTTATGAGCTTCGGGTTTTAGCAAAAACAGATTCTGATAGCCGAGCCTGCATTGCCGAAGCTGGTGCCATACCACTTTTGGTTCGGTATATTAGCATCGACGTTGGGTTGAATAACCCGAACCTCCAGGTTCATGCTGTTACCACAATCCTCAACCTATCAATTCTCGAAGCCAATAAAACGAGGATAATGGAAACTGAAGGAGCATTAAACGGTGTCGTTGAGGTGTTGCAATTTGGTGCCACGTGGGAGGCAAAGGCAAATGCAGCTGCAACGTTGTTTAGTTTAACAGGTGTGGCTGCATATAGAAGGAGGCTAGGGAGGAAGACACGTGTCGTTAGCGGGTTGGTCCAACTGGCAAGGTGTGGGCCCGTGGGTGCAAGGAGGGATGCGTTGGCAGCGATATTGCAAATGGCAGGAGATAGAGAAACTGTTGTGAAGTTGGTGGAGGGTGGAGCGGTGGAGATGGTGGTGGAGGTTATGGCGGCGCTTGAGGAGGAGGCGGTGGCTATACTTGAGGCGGTGGTGAAGCGTGGTGGGTTGGTGGCAGTGGCTGTAGCTTATGCTGGGATTAGGAAATTGGGGGTTGTGTTGAGGGAGGGTTCTGAGAAGGCTAGGGAGAGTGCAGCTGCGACACTTGTAACGATGTGTAGGAAAGGTGGGTCGGAGATTGTGGCGGAGCTGGCGGCGATTCCGGGGGTTGAGAGAGTGATATGGGAGTTGATGGCGGTGGGGAGTATGAGAGGGAGAAGGAAAGCCGCCACTTTGTTGAGAATTTTGCGGCGGTGGGCGGCGGGGTTGAATGGCGTAGAGAGTGAAGGATTCACAACAACCCTTAATTCGCCATCAATTGTGGTCGTACCAACTTCCAATTTAGTTGTATAA 2070 0.4483 MAITPHMFTTQKRRPFESFIPKKFTDFNLLHSLIHITNQISSFNPTNLFLLKRSSCSVVHKAKLLNVLFEDLVRNSIPLCSNSLILCFEEMYIVLHQIKTLIEDCIKGSKFSLLMQVETVADTFHILIRELSTLLDIFSVQELDLNDDVFELVILIRKQCSESKIVIGKEETKLRNDIVLVIERIKNEIVPDKSKIAEIFSKLEIRDSSSCRTEIEALEKEIHNWIDERSKLEIVALIGLVRYTKCVLFGASTPSSSKEVSRRKQPSEVVAPVDFRCPISLELMQDPVVVATGQTYDRNSIKLWMDSGHNTCPKTGQKLIHTELIPNRALRNIIAIWCREQKIPFEGESVNGKLNDRLTNKAALKATKMTALFLVEKLKFHVEVSDSSNEELNGVVYELRVLAKTDSDSRACIAEAGAIPLLVRYISIDVGLNNPNLQVHAVTTILNLSILEANKTRIMETEGALNGVVEVLQFGATWEAKANAAATLFSLTGVAAYRRRLGRKTRVVSGLVQLARCGPVGARRDALAAILQMAGDRETVVKLVEGGAVEMVVEVMAALEEEAVAILEAVVKRGGLVAVAVAYAGIRKLGVVLREGSEKARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSMRGRRKAATLLRILRRWAAGLNGVESEGFTTTLNSPSIVVVPTSNLVV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0189 689 SUPERFAMILY ARM repeat 386 655 IPR016024 -
Lal7g0189 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 14 670 - -
Lal7g0189 689 SUPERFAMILY RING/U-box 270 344 - -
Lal7g0189 689 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Lal7g0189 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 463 IPR000225 GO:0005515
Lal7g0189 689 Pfam U-box domain 272 342 IPR003613 GO:0004842|GO:0016567
Lal7g0189 689 Coils Coil 215 235 - -
Lal7g0189 689 CDD RING-Ubox_PUB 275 317 IPR045210 -
Lal7g0189 689 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Lal7g0189 689 PANTHER U BOX DOMAIN-CONTAINING 14 670 - -
Lal7g0189 689 Gene3D - 379 653 IPR011989 -
Lal7g0189 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 346 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0189 Lal-Chr7 2533964 2536033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0189 11 683 U-box Gene Family AT5G01830 54.919 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0189 - - cam:101506886 899.427