Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0187 ATGGCTTTGATTGTGGATGAACAATCAAACTTCAAGTACTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCCCTTGGAGGACACATGAGGGCACATGGCATTGGGGATGAAACGGGCCAAATCGACGACGATGACCCTGAAGCTGATTGGGAAGAGAGGTTTGGTGGCAATGTACCACCAAGCAATAAACGTATGTATGCGCTAAGAACAAACCCTAATAGGTTAAAAAGTTGTAGGGCATGTGAGAATTGTGGAAAAGAGTTTTCTTCATGGAAATCTTTCCTTGAACATGGAAAGTGCACCTCTGAAGAAGCTGAGTCTCAAGTCTCATCTCCTGCTTCTGAAGCCGATGATGATGGTGTTGAAAGAAGAGGTTGTGGTTGGTCTAAAAGGAAAAGATCATTCAGAGCCAAAGTTGGCGATAGCTTCAATAAATATAATTGTCCTTCGACCGAAGAAGAAGATCTAGCTAATTGTTTGATGATGTTGTCCAATGCCATTGTCGATCCTCCTATGGCTGACCCTGAAGAGTCTTGTGCCTCAGGAAGCAAAGACGAGGAAAGAAGAAACCCTATGAACTTCATTACACCATTGTCATGCAGAGTTAATCTTGTTGATAATAAGGCTAAAGGAGTAGCAAAAGGGTTATTTGAATGTAAAGCATGCAAGAAAGTTTTCAATTCTCATCAAGCATTGGGTGGCCATAGAGCTAGCCATAAAAAAGTTAAGGGATGTTTTGCTGCAAGACTTGATAATAATAACCTTGATGATAATCTACCTGAGGATGATGTCATAACACATGAAGAGTTTTTTCCTACAAAATCAAACTCAACTCTTCAATTTGATCATGGTTCCACATTAGCCTCTTCCTCTAAGAGAAAATCAAAAGTTCATGTATGTTCTATTTGTCATAGGAGTTTCTCTTCAGGACAAGCATTGGGTGGACATAAAAGGTGCCATTGGATCACATCATCAAATGCACCTGATACTTCTACATTGGCTAGATTTGAACAATTTCAAGACCACATGGAACAAATACAAAAGTTTGATAACTCTTCTGACCCACTTGAACTCAAACTTGACCTAAACCTTCCTCCATCCAATGACCTTACCAGAAAGAATTTGTCCTCAGAAATTTTCTTGCTTCCATGGGTTGGAACAAATGACATTATTAAAGATGATAATAATAATAATAATATTAATAATAACAATAATAATAGTCAATGTCAGAGTCACCAGCAACACAACCAAATTGTCAATGACAACAACAACAATGAGGACAACAATAATAACAACAGTAATGTTTTGTTGCAAAGTGATGTGGATAATGAAGCTGATAATAAGGCAAAGTTAGAAAAACTAAGTGAGCTAAAGGACATAAACAATGGTGGAAATTCTTCACCATGGTTGCAGGTTGGAATTGGCTCAACAAATGATGAGGGAAAAGAGAAATGA 1464 0.3798 MALIVDEQSNFKYFCKICKKGFGCGRALGGHMRAHGIGDETGQIDDDDPEADWEERFGGNVPPSNKRMYALRTNPNRLKSCRACENCGKEFSSWKSFLEHGKCTSEEAESQVSSPASEADDDGVERRGCGWSKRKRSFRAKVGDSFNKYNCPSTEEEDLANCLMMLSNAIVDPPMADPEESCASGSKDEERRNPMNFITPLSCRVNLVDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNNNLDDNLPEDDVITHEEFFPTKSNSTLQFDHGSTLASSSKRKSKVHVCSICHRSFSSGQALGGHKRCHWITSSNAPDTSTLARFEQFQDHMEQIQKFDNSSDPLELKLDLNLPPSNDLTRKNLSSEIFLLPWVGTNDIIKDDNNNNNINNNNNNSQCQSHQQHNQIVNDNNNNEDNNNNNSNVLLQSDVDNEADNKAKLEKLSELKDINNGGNSSPWLQVGIGSTNDEGKEK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0187 487 MobiDBLite consensus disorder prediction 460 487 - -
Lal7g0187 487 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Lal7g0187 487 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Lal7g0187 487 Gene3D Classic Zinc Finger 10 104 - -
Lal7g0187 487 Gene3D Classic Zinc Finger 218 323 - -
Lal7g0187 487 PANTHER OS02G0659100 PROTEIN 1 486 - -
Lal7g0187 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 301 323 IPR013087 -
Lal7g0187 487 MobiDBLite consensus disorder prediction 398 439 - -
Lal7g0187 487 ProSitePatterns Zinc finger C2H2 type domain signature. 303 323 IPR013087 -
Lal7g0187 487 MobiDBLite consensus disorder prediction 105 125 - -
Lal7g0187 487 MobiDBLite consensus disorder prediction 462 477 - -
Lal7g0187 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Lal7g0187 487 PANTHER OS02G0659100 PROTEIN 1 486 - -
Lal7g0187 487 SMART c2h2final6 301 323 IPR013087 -
Lal7g0187 487 SMART c2h2final6 82 102 IPR013087 -
Lal7g0187 487 SMART c2h2final6 220 242 IPR013087 -
Lal7g0187 487 SMART c2h2final6 13 35 IPR013087 -
Lal7g0187 487 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Lal7g0187 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Lal7g0187 487 MobiDBLite consensus disorder prediction 174 193 - -
Lal7g0187 487 SUPERFAMILY beta-beta-alpha zinc fingers 219 323 IPR036236 -
Lal7g0187 487 Pfam C2H2-type zinc finger 13 35 - -
Lal7g0187 487 Pfam C2H2-type zinc finger 300 325 - -
Lal7g0187 487 Pfam C2H2-type zinc finger 220 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0187 Lal-Chr7 2496443 2497906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0187 118 367 C2H2 Transcription Factor Family AT1G02040 37.402 8.70e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal7g0187 zf-C2H2_6 4.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0187 - - gmx:100793846 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0187 7 2496443 2497906 Lal7g0187 7 2496443 2497906 ECH
Lal19g0276 19 2786060 2787091 Lal7g0187 7 2496443 2497906 ECH