Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0123 ATGCAACCAAGGACAAGCATTGGTGACGGTTTTCGTGTTAGTGTGTCTAGTTTACCTAGCAATGCAAGTGGAGGATCAGAACCAGATGACATAGAGTCGCTAGGAGATGTTTATATATGGGGAGAGGTTTCGGCAGAAGGGGTTGTTGCATCAGATGGGAATGGAATTCAAGCCCCTAGCAAAATAGATGTGCTAATTCCCAAGCCACTAGAGTCAAATGTTGTTCTTGATGCTAACCAGATTGCGTGTGGTGTGCACCACATCGCGATTGTAACGAGACAGGGAGAAGTTTTTACTTGGGGAGAGGAATCTGGCGGAAGACTCGGTCATGGAATTGACCGAGATTTTTGCAGCCCTCAACTAGTTGAATTTCCTGCAGCAACTAATTTGGATTTTGTTGCATGTGGAGAGTATCATACATGTGCTATATCAAAATCTGAAGATATTTTTACATGGGGTGATGGTGCACATAATGTTGGACTTCTAGGCCATGGCACTGAGGCTAGTCACTGGATACCGAAAAGGGTCGATGGCCCTTTGGTAGGACTTCAAGTTGTATCAGTTGCATGTGGCACATGGCATTCGGCATTGGCGACCTCGAATGGAAAATTGTTTACATTTGGTGATGGAACATTTGGTGTGTTAGGCCATGGAGATCAAGAGAGTGTGATGTACCCAAAAGAAGTGCAAATGTTAAGTGGACTAAGGACTATTAAGGTTGCATGTGGAGTATGGCACACTGCAGCTATTATAGAAGTTTCATTTCAATCAGGTTCAAATGTTACATCATGGAAACTCTTCACATGGGGCGACGGCGACAAATATCGACTAGGCCATGGAAACAAAGAAACATACCTACAACCAACCCGTGTCTCTTCGCTTATCGAATATAATTTCCATCAGATTTCATGTGGCCACACCATGACTGTTGCTCTCACAACATCTGGCCATGTTTTTACAATGGGAGGCACCGAAAACGGTCAACTAGGAAATCCTTTGTCAACAGGAAAAGCACCTACCCTAGTACAAGACAAGTTACTAGGTGAGTTTGTTGAGGAAATATCATGTGGAGCACAACATGTTGCTGTCTTAACATCAAAAAGTGAACTATATACTTGGGGAAAAGGTACTAATGGAAGATTGGGACATGGAGACATAGAAGATAAGAAATCTCCAACATTGGTTGCAGCCTTAAAAGATAGACATGTGAAACATATCTCATGTGGTTCAAACTTTACATCTTGTATATGTATCCATAAATGGGTTGTCGGAACTGACCAATCTGGTTGCTCTGGTTGTAGACAAGGTTTCGGTTTAACTAGAAAACGACACAATTGTTACAACTGTGGTTTGGTATATTGCCATGCTTGTAGTTCAAGAAAGGTATTGAAAGCATCATTGGCTCCGACACCGGACAAACCGCATCGGGTATGTGATGCTTGTTATGCTAAGCTCAAGGCTATTGAAGCTGGTACTGCTTCATCAATGTTTCATAGGAAAGCTAATCCTTCTCAAGGTTCCATTGGTGGCAAAGAAATATTAAGCACTTTGAAAGCTACACCTTCTCATAGTTCCATTGATGGAGTAGTAAAGTCATCAAGAATTCTTTTATCTCCTGCCATTGAACCAATAAAATACCTTGAGATAAGGAATAGTAAAAGTGGAAGCAAATATGATTCTACTTCATTTGTTAGAGCTTCTCAAGTTCCATCACTTTTACAATTGAAAGATGTTGCATTTCCAAGTTCATTGAGTGTTATTCAAAATGCTTTGAAAACAGCTTCACCTCAACAAAATCTTCATGAAAATTCAACATTGCTTGCACCTTGTCCAAGAAAACCAAGTCCTCCACGTTCTTCTAGTCCTAGAGTTTCTAATAGGATTGATAATTTGAGAAAAACAAGTGAGCTTTTGAAGGAAGAAGTCTCAAAATTGCAAAACCAAGTCAGAAGTTTAAACAAGAAAAATGACATGCAAGACATGGAGATTCTGAAGCTCCAGAGAAATGCTACAGAAGCTACTGCTTTTTCTGCAGTGGAATTTTCTAATCTCATGATAACAAAAGAATTTATAGAGTCTACTATAGATAAGGATCATAAGGGACAAAGTGAAATAGTGAAGGAAATGACTGAGAAGTTACCACCAGAAATTCCAGAAAGTACAATTTTAAGAACCATTCATACTAAAGCTGAAGATTTTCTAAAAGAAACTTTAGAATCTGAAACATGTTCCAAACCATCAAAGTTGGAATCTGAGCAACAAAATGAACCTGATACACATTCTTCTCCTATTGTCCCTTCTAAACTGCAAGAACAAACACAAGAAGAAAATGTTGATGCTGCAAGAGTTGATCCATCACAAGCTAATGCATCAATGATGGAGCTTGAAGAACAAAAGCAACATGATATAGCTGCATTAGATAATGTCTCTTCTAAACAGCAAAATCACATGGTAGAAGAAAATGTTGACACTGCAAGAGTTGATCCATCACAAGCTGAAGAACATGTTCTTCAAGAAAGTAATGCATCAATGAAGGAGCTTGAAGAACAAAAGACACATGATATAGTTGCATCAGATAATGATTCTTCTGAGCAGCAAAATCATATAGGAGAAGAAAATGTTGACACTGCAAGAGTTGACTCATCACAAGCTGAAGATAATGAACTTCAAGAAAGTAATGCATCAATGATGGAGCTTGAAGAACAAAAGCAACATGATATAGTTGACTCAGATAATGTCTCTTCTAATCAGCAAAATCACATAGTAAAAGAAAATGTTGATGCTGCAAAAGTTGATCCATCACAAGCTGAAGAACTTGTTCTTCAAGAAAGTTATGCATCAATGATGGAACTTGAAGAACAAAAGACACATGATATACAAAATCACATAGTAAAAGAAAATGTTGATGCTGCAAGAGTTGACTCATCTCAAGCTGAAGAAAATGTCCTTAAAGAAAGTAATGGGTCATTTGTGTCTAGTATTGAAGAAGAAGTGATTCCACAAACCTCGGAAAATGTTGACACTACAAGAGTTGACACATCACAAGCTGAAGAAAATGTTATTCAAGAAAGTAATGGATCATTTTTGTCTAGTATCGAAGAAGAAGTGATTCCACAAACCTCGGAAAATGTTGACACTACAAGAGTTGACACATCTCAAGCTGAAGAAAATGTCCTTAAAGAAAGTAATGGATCATTTTTGTCTAGTACTGAAGAAGTGATTCCACAAACCTCAGAAAATGTTGACACTGCAAAAGTTGACTCATCTCAAGCTGAAGAAAATGTGCTTCAAGAAAGTAATGGATCATTTGTGTCTAGTATTGAAGGAGAAGTGGTTCCACAAACCTCAGAAAATGGTACTAGGTTGTTGGATTCAACAACAGGGAGACAAGGAGAAACACAAGTAGTTGAAACATCAGGAAATGGTTCTAGATCATTGGAATCTTCTAGACCTATGAGACAAGGAGAAACACAAATAATTGAACAGTTTGAACGTGGTGTTTTTGTCACACTCATATTAAGGCCTGATGGTATCAAAGTTTTCAAAAGAGTTAGATTCAGTAAAAGAAGGTTCACTGAAAGTGAAGCTGAAGAATGGTGGAACCAAAACAAAGGTAGGGTCCTTAGAAAATATTACCCTTCCCTTCAAAAGCTAACATCTACTGGATCATCTAACATTTCACAACATGCTGAAGAACATAATGATGCATCACCTACCTAA 3720 0.3825 MQPRTSIGDGFRVSVSSLPSNASGGSEPDDIESLGDVYIWGEVSAEGVVASDGNGIQAPSKIDVLIPKPLESNVVLDANQIACGVHHIAIVTRQGEVFTWGEESGGRLGHGIDRDFCSPQLVEFPAATNLDFVACGEYHTCAISKSEDIFTWGDGAHNVGLLGHGTEASHWIPKRVDGPLVGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVMYPKEVQMLSGLRTIKVACGVWHTAAIIEVSFQSGSNVTSWKLFTWGDGDKYRLGHGNKETYLQPTRVSSLIEYNFHQISCGHTMTVALTTSGHVFTMGGTENGQLGNPLSTGKAPTLVQDKLLGEFVEEISCGAQHVAVLTSKSELYTWGKGTNGRLGHGDIEDKKSPTLVAALKDRHVKHISCGSNFTSCICIHKWVVGTDQSGCSGCRQGFGLTRKRHNCYNCGLVYCHACSSRKVLKASLAPTPDKPHRVCDACYAKLKAIEAGTASSMFHRKANPSQGSIGGKEILSTLKATPSHSSIDGVVKSSRILLSPAIEPIKYLEIRNSKSGSKYDSTSFVRASQVPSLLQLKDVAFPSSLSVIQNALKTASPQQNLHENSTLLAPCPRKPSPPRSSSPRVSNRIDNLRKTSELLKEEVSKLQNQVRSLNKKNDMQDMEILKLQRNATEATAFSAVEFSNLMITKEFIESTIDKDHKGQSEIVKEMTEKLPPEIPESTILRTIHTKAEDFLKETLESETCSKPSKLESEQQNEPDTHSSPIVPSKLQEQTQEENVDAARVDPSQANASMMELEEQKQHDIAALDNVSSKQQNHMVEENVDTARVDPSQAEEHVLQESNASMKELEEQKTHDIVASDNDSSEQQNHIGEENVDTARVDSSQAEDNELQESNASMMELEEQKQHDIVDSDNVSSNQQNHIVKENVDAAKVDPSQAEELVLQESYASMMELEEQKTHDIQNHIVKENVDAARVDSSQAEENVLKESNGSFVSSIEEEVIPQTSENVDTTRVDTSQAEENVIQESNGSFLSSIEEEVIPQTSENVDTTRVDTSQAEENVLKESNGSFLSSTEEVIPQTSENVDTAKVDSSQAEENVLQESNGSFVSSIEGEVVPQTSENGTRLLDSTTGRQGETQVVETSGNGSRSLESSRPMRQGETQIIEQFERGVFVTLILRPDGIKVFKRVRFSKRRFTESEAEEWWNQNKGRVLRKYYPSLQKLTSTGSSNISQHAEEHNDASPT 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0123 1239 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 240 250 IPR000408 -
Lal7g0123 1239 SMART fyve_4 418 487 IPR000306 GO:0046872
Lal7g0123 1239 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 424 486 IPR017455 -
Lal7g0123 1239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 495 IPR013083 -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 367 IPR000408 -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 756 780 - -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 94 IPR000408 -
Lal7g0123 1239 PRINTS Chromosome condensation regulator RCC1 signature 97 113 IPR000408 -
Lal7g0123 1239 PRINTS Chromosome condensation regulator RCC1 signature 147 163 IPR000408 -
Lal7g0123 1239 PRINTS Chromosome condensation regulator RCC1 signature 188 204 IPR000408 -
Lal7g0123 1239 PRINTS Chromosome condensation regulator RCC1 signature 204 218 IPR000408 -
Lal7g0123 1239 PRINTS Chromosome condensation regulator RCC1 signature 305 323 IPR000408 -
Lal7g0123 1239 PRINTS Chromosome condensation regulator RCC1 signature 363 384 IPR000408 -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 95 146 IPR000408 -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 737 781 - -
Lal7g0123 1239 SUPERFAMILY FYVE/PHD zinc finger 420 489 IPR011011 -
Lal7g0123 1239 Pfam FYVE zinc finger 420 486 IPR000306 GO:0046872
Lal7g0123 1239 MobiDBLite consensus disorder prediction 737 755 - -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 1219 1239 - -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 594 630 - -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 1116 1154 - -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 315 IPR000408 -
Lal7g0123 1239 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1078 1142 - -
Lal7g0123 1239 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1139 1217 - -
Lal7g0123 1239 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 954 1006 - -
Lal7g0123 1239 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 948 - -
Lal7g0123 1239 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1004 1044 - -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 857 890 - -
Lal7g0123 1239 Pfam Transcription factor regulating root and shoot growth via Pin3 1157 1211 IPR013591 -
Lal7g0123 1239 Gene3D - 20 157 IPR009091 -
Lal7g0123 1239 SUPERFAMILY RCC1/BLIP-II 35 421 IPR009091 -
Lal7g0123 1239 Coils Coil 882 902 - -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 147 201 IPR000408 -
Lal7g0123 1239 CDD FYVE_like_SF 430 482 - -
Lal7g0123 1239 MobiDBLite consensus disorder prediction 865 885 - -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 419 IPR000408 -
Lal7g0123 1239 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 253 IPR000408 -
Lal7g0123 1239 Coils Coil 628 662 - -
Lal7g0123 1239 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1139 1217 - -
Lal7g0123 1239 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1078 1142 - -
Lal7g0123 1239 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 948 - -
Lal7g0123 1239 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1004 1044 - -
Lal7g0123 1239 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 954 1006 - -
Lal7g0123 1239 Gene3D - 158 421 IPR009091 -
Lal7g0123 1239 ProSiteProfiles BRX domain profile. 1157 1212 IPR013591 -
Lal7g0123 1239 Coils Coil 830 850 - -
Lal7g0123 1239 Pfam Regulator of chromosome condensation (RCC1) repeat 315 364 IPR000408 -
Lal7g0123 1239 Pfam Regulator of chromosome condensation (RCC1) repeat 369 416 IPR000408 -
Lal7g0123 1239 Pfam Regulator of chromosome condensation (RCC1) repeat 148 197 IPR000408 -
Lal7g0123 1239 Pfam Regulator of chromosome condensation (RCC1) repeat 95 143 IPR000408 -
Lal7g0123 1239 Pfam Regulator of chromosome condensation (RCC1) repeat 201 250 IPR000408 -
Lal7g0123 1239 Pfam Regulator of chromosome condensation (RCC1) repeat 266 312 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0123 Lal-Chr7 1348891 1353800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0123 1156 1211 Major Intrinsic Protein MIP AT1G31880 41.071 3.79e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0123 - - lang:109340921 2054.64