Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0068 ATGTCTTCTCCTCCTCCCTTATCATTAAACGTCGTCGGTTCAGATACCTTTAACCCACTTTCAACTTCCACTTCACGCCGTTCATCTTCTCCGTTAAAGAACCTCAGCCCCACCATTCTCATCATTGTAACCGTCCTTGCCGTTACCGTTATCGTTTCCTTATCAATCTGCTTCCTAATCCGTCACCTTAACCGTCGCTGCCTCCGCCGTCTCTCCCATTCCTCCTCCGCCGTTCCCTCCTCCGCCGCTGCAACTCCGATCTTCACTTCTAGCCGCCGCATTTTGCCTGAAATCCCTCCCTCTTCTGTAATTGACTCACTCCCTTTGTTCACGTTTTCCTCCGTCACTCGCCGCTCCGCAACCGCCGCCGCTGACTGCGCCGTGTGCTTGTCGAAGTTTCAAGACCACGACCTCCTCCGTCTTCTTCCGCTTTGCTGCCACGCGTTCCATGCGGAATGCATTGACACTTGGCTTCAATCCAACCTCTCATGTCCGCTCTGCCGATCCGCCATCGCCGCCGCTGATAACGACCTCGCTAAGATTCTCCGATCGTCATCCTCCGCCGGGAGCGACAGTTTCCGAGTTGAGATAGGGAATGTAAGCCGCCGAGGAACCGCACCGGAGGATTCCGTATCTTCCGCCGCCGATGACGGCCGTAGTGGCGGCGCGGGGACGAGGTCATATTCGATTGGATCGTTCGAGTACTTAGTGAATGAGGAATCAGAGGTTCCTTTCAGTAACGCTCACCGGAGAAGTGTTTCAGATCAAAAGGATATTCCGGTTCCGGTGGATTATCCGGTGAATCAGAATGAAGCTTTTCTAGCCGGAGATGTTGCCGGAGCTAGAAATTGGCTTAAGGATTACGTGGATAGAATTTCAGCTTCAATATCATCGAGAACGGTGTCGTTTAGAAGCTCTGGTAGATTTGGCGGGAGTAGTAGAAGAAGCGACGTCGTTCCAGTAAGTGTTGAATATGATATTGAAGGTAACAGAATTGGTGAAGAGATTACTGAAATGTTTCGTTGGATTTCAGGGGTATGA 1041 0.5149 MSSPPPLSLNVVGSDTFNPLSTSTSRRSSSPLKNLSPTILIIVTVLAVTVIVSLSICFLIRHLNRRCLRRLSHSSSAVPSSAAATPIFTSSRRILPEIPPSSVIDSLPLFTFSSVTRRSATAAADCAVCLSKFQDHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIAAADNDLAKILRSSSSAGSDSFRVEIGNVSRRGTAPEDSVSSAADDGRSGGAGTRSYSIGSFEYLVNEESEVPFSNAHRRSVSDQKDIPVPVDYPVNQNEAFLAGDVAGARNWLKDYVDRISASISSRTVSFRSSGRFGGSSRRSDVVPVSVEYDIEGNRIGEEITEMFRWISGV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0068 346 Pfam Ring finger domain 125 168 IPR001841 -
Lal7g0068 346 MobiDBLite consensus disorder prediction 203 224 - -
Lal7g0068 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 330 - -
Lal7g0068 346 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Lal7g0068 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 330 - -
Lal7g0068 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 177 IPR013083 -
Lal7g0068 346 CDD RING-H2_PA-TM-RING 125 168 - -
Lal7g0068 346 SUPERFAMILY RING/U-box 103 173 - -
Lal7g0068 346 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0068 Lal-Chr7 642312 643352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0068 21 168 C3H Transcription Factor Family AT2G34990 36.601 1.96e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0068 K10663 - gmx:100776516 384.8