Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1713 ATGAAATTTTCACATGACATGGATGCACAAATTAATACACCTCCTGAGATATTGGAACAATGTAGAATATGTCATGATGAGGACAAAGATTCAAACATGGAGATTCCATGTTCTTGTTGTGGCACCTTGAAGTATGCGCACAGAAAATGTGTCCAAAGATGGTGCAATGAGAAAGGGGACACTACCTGTGAGATTTGCCTACAGGAATTTAGTCCTGGCTATAATGCACCACAACCTTCCCTATTCCATTATGGTGATTCTCCAATAAATTTTGGATGGGGTATTCAGAATGATGATTTCATGGGAATGTTTAATGCTAATAATCATGAATTGTTAGAATCTGAATTGGAATATTCATCATCACCCTCTCCAAGTACCCTCAAATGTTTCAGAATCATTGCCATCATTTTTATTGTTCTTCTTGTTTTACATCATGCACTTCCAATTATATTCGTATTAAGTGAAATATTCAGTGGATTACAAGAGTATTCATGGACAATGATCATGCTAGTGTTGTTGAGAGCCATTGAAATGGTTGTACCAATCAATTTATTAGTTCAAGCTATCATTGGGATCCAAAGGCTTCAACATCAGGAACATCATTCTGATATTCAATCACATGAAGAAAATGACTTAGACCAATCTGAGTTAAGTGTCATTCATATACAGTGA 672 0.3571 MKFSHDMDAQINTPPEILEQCRICHDEDKDSNMEIPCSCCGTLKYAHRKCVQRWCNEKGDTTCEICLQEFSPGYNAPQPSLFHYGDSPINFGWGIQNDDFMGMFNANNHELLESELEYSSSPSPSTLKCFRIIAIIFIVLLVLHHALPIIFVLSEIFSGLQEYSWTMIMLVLLRAIEMVVPINLLVQAIIGIQRLQHQEHHSDIQSHEENDLDQSELSVIHIQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1713 223 SMART ringv_2 20 67 IPR011016 GO:0008270
Lal6g1713 223 Pfam RING-variant domain 21 66 IPR011016 GO:0008270
Lal6g1713 223 ProSiteProfiles Zinc finger RING-CH-type profile. 13 73 IPR011016 GO:0008270
Lal6g1713 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 4 213 IPR033275 -
Lal6g1713 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 77 IPR013083 -
Lal6g1713 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 4 213 - -
Lal6g1713 223 SUPERFAMILY RING/U-box 19 70 - -
Lal6g1713 223 CDD RING_CH-C4HC3_MARCH 21 66 - -
Lal6g1713 223 Pfam Protein of unknown function (DUF3675) 72 189 IPR022143 -
Lal6g1713 223 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1713 Lal-Chr6 19851888 19855971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1713 8 66 C3H Transcription Factor Family AT2G37950 43.548 1.28e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1713 - - gmx:100806609 250.366