Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1689 ATGGCTGCTAGCATCGACATGTCTCTCGACGACATCATTAAGCGATCCACCACCGCCACCGCCACCGCCTCCGCCTCTCGCCGTCGTCCCAGTGATAGACCCCACGGTCCAGGTCCCGATCGTCGCTTCGATGTTCGCAAACCGGCCAAAACGACACCGTATTTCATCCCGCAGGAAAGGGCATTATTGTCAAGGAAAGTGTTGCAACCGAATTTGATGGTTCCAGAAATGGGTTTTGATGGAAATGCTTCTGAGCCTCAGATTGATACTGAATCTGTACTTTACATATCCAACTTGCATTCTGAGGTTACTAACTATGATGTTAAGTTGCTCTTCTCTGAAGAGGGTGACTTGAAAAGATACTGCATCCATTATGACAAAAATGGGAAATCAAAGGGAACAGCAGAAGTTGTCTTTGCGAGGCGTTCTGATGCTTTAGCAGCCATAAAGAAATACAACAATATGAAGCTTGATGGGAAACCATTGCAAATTGAGCTTGTTGGAACATGCTCAGTTACTCCTCCCGTGATGCCTCCTTTTCAAAGTAGCTTATTGGGACCAATACCAAATGATGGCCGTGTAAGGTTATCTTCATTTACGGGTTCAATAACTCCTGATGTTACGCCTCCTTTTCAAAGTAGCTTACTAGGACCAATACCAAATGATGCCCGTAGAAGGTTCCACAATGGCTTTGCACATGGCCGTCTTCCAAGGGGCCCTGGAGAAGGGAAAGCTCTTAGCAAAAAGGTATCTGCTAGAGATCTCGATGAAGACTTGGAGAGATACCGGCGTCTTTCAAGGGGCAGTGGACAAGTGAAGGGTCATGCCGGAAAGGTATCTGCTAGAGATCTTGATGATGACTTGGAGAGGTATCACTCACAAGCTATGCAGATAAAAAACAAAGAAAATGGTAGCTAG 918 0.4608 MAASIDMSLDDIIKRSTTATATASASRRRPSDRPHGPGPDRRFDVRKPAKTTPYFIPQERALLSRKVLQPNLMVPEMGFDGNASEPQIDTESVLYISNLHSEVTNYDVKLLFSEEGDLKRYCIHYDKNGKSKGTAEVVFARRSDALAAIKKYNNMKLDGKPLQIELVGTCSVTPPVMPPFQSSLLGPIPNDGRVRLSSFTGSITPDVTPPFQSSLLGPIPNDARRRFHNGFAHGRLPRGPGEGKALSKKVSARDLDEDLERYRRLSRGSGQVKGHAGKVSARDLDDDLERYHSQAMQIKNKENGS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1689 305 SMART rrm1_1 93 165 IPR000504 GO:0003723
Lal6g1689 305 Gene3D - 87 168 IPR012677 -
Lal6g1689 305 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 263 - -
Lal6g1689 305 MobiDBLite consensus disorder prediction 266 286 - -
Lal6g1689 305 Coils Coil 281 301 - -
Lal6g1689 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Lal6g1689 305 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 1 263 - -
Lal6g1689 305 MobiDBLite consensus disorder prediction 230 251 - -
Lal6g1689 305 MobiDBLite consensus disorder prediction 16 50 - -
Lal6g1689 305 SUPERFAMILY RNA-binding domain, RBD 65 167 IPR035979 GO:0003676
Lal6g1689 305 MobiDBLite consensus disorder prediction 28 48 - -
Lal6g1689 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1689 Lal-Chr6 19669053 19672306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1689 94 167 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.11e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1689 K12881 - gmx:100785926 228.794