Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1680 ATGTTGCTTTCTTGTAGCTCTATCAACAACAACCATATGTTTGAGTGCAAGACATGTAACAAGAAGTTCCCTTCATTTCAAGCACTTGGTGGCCATAGGGCTAGTCACAAGATGCAAAGATTGAATATGGCAAGAGATAATAAAGACATGAATAAGCATTCAATATCAACCCTAAAGCCTAAAACCCATGAATGTTCCATTTGTGGGTTGGAATTTGCAATAGGGCAAGCATTGGGTGGCCACATGAGAAGGCATAGATCTACAAATTTAGATGGAAATGTGCATATTTCAACAAATAGGAGTAATAGTTCTTTATCAAATAGGATTGAAGCTAGCAACAAGGGAATTTTTGGTTTGGATTTGAATTTGACACCCTTTGAGAATGATCTAGAGCTTTTGAAGATTGAAAATGGCAACTACTTTGGTTGA 429 0.3683 MLLSCSSINNNHMFECKTCNKKFPSFQALGGHRASHKMQRLNMARDNKDMNKHSISTLKPKTHECSICGLEFAIGQALGGHMRRHRSTNLDGNVHISTNRSNSSLSNRIEASNKGIFGLDLNLTPFENDLELLKIENGNYFG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1680 142 Pfam C2H2-type zinc finger 63 87 - -
Lal6g1680 142 Pfam C2H2-type zinc finger 14 37 - -
Lal6g1680 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Lal6g1680 142 PANTHER ZINC FINGER PROTEIN ZAT12 1 131 - -
Lal6g1680 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 41 IPR013087 -
Lal6g1680 142 Gene3D Classic Zinc Finger 45 115 - -
Lal6g1680 142 SMART c2h2final6 63 85 IPR013087 -
Lal6g1680 142 SMART c2h2final6 14 36 IPR013087 -
Lal6g1680 142 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lal6g1680 142 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Lal6g1680 142 PANTHER ZINC FINGER PROTEIN ZAT5 1 131 - -
Lal6g1680 142 Gene3D Classic Zinc Finger 9 34 - -
Lal6g1680 142 SUPERFAMILY beta-beta-alpha zinc fingers 13 85 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1680 Lal-Chr6 19559849 19560277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1680 14 133 C2H2 Transcription Factor Family AT2G37430 52.500 2.46e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal6g1680 zf-C2H2_6 6.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1680 - - gmx:100500371 161.77