Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1675 GGTATGGTTGGAAACGACGACGTTCGTGCTCGGAAAGTGTTCTGGCGCTCCGCCTCTTGGTCCGCCTTCCACACCGCCGCGGACGCCAACCAACCTTCCGGCGAGGCGGTGATTCATTTTGCCGATCCCAATTCCGGTGACGGCCATGGTCGACGGTTCCCTCCGCCTCATCAAAATTCAAAGGCTCGATCGTGCCTCTCGCTGTTGCAGCCGCTTTCCATCGCTCCTAGGAGCTTGGAGGAGTGGCCGAAGGCGAGCTCTGATGATATCGGCGAGTGGCCACAGAACGCCACCACACCTAGTGGTGGCAGAGGTAATAATGGTGAAAGGTTGAAACTTGATTTGTCTTCAATTCAGGAAAATCATGATAATAGGAACGATACTAATGGTAATAACAGCATTGGACTTGTGAAGAGGGATAAGATTGCTTTTTTCGATAAAGAATGTTCGAAAGTCGGTGATCATATTTGCCTTGGTGGTGATGCTGTTGCTAAAGATAGGGATATATTGAAACACAATGGGATCACTCATGTTTTGAATTGCGTTGGTTTTGTGTGTCCTGAGTATTTTAAGGCCGATTTCGTGTATAGGACATTGTGGTTGCAGGATAGTCCATCCGAGGATATTACTAGTATTCTCTATGATGTGTTTGATTATTTTGAGGATGTTAGGGAATTGGGTGGAAGGGTTTTTGTGCATTGTTGCCAAGGGGTGTCTCGGTCTACATCTTTGGTTATTGCATATCTTATGTGGAGGGAAGGTCAGAGTTTTGATGATGCTTTTCAGTATGTTAAGGCGGCGAGGGGTATTGCCGATCCGAATATGGGTTTTGCTTGCCAGTTGTTGCAGTGCCAGAAAAGGGTCCATGCCGTTCCCCTTAGCCCTAGCTCTTTACTTAGGATGTATAGAATTGCTCCTCACTCACTGTATGACCCTTTGCATCTTGTCCCCAAAATGTTGACGGATCCTGCTTCGTCTGCACTGGATTCTAGAGGTGCGTTTATTGTGCACATTCCTTCTGCGGTATATGTTTGGATTGGTAAGAATTGTGAGGCCATCATGGAGAGGGATGCCAGAGGGGCCGTGGGTCAGATCATTCGCTATGAGAAAGTGCAGGGACCTATTATAATGATTAAGGAAGGTGATGAGCCGTCTTACTTTTGGGATGCTTTTTCGAAATTCCTGCCTCTGATGAACAAATCTAGAAATGGAGTGGTAAATATCAAATCGTGTGTTAAGGTTTGGCCTGGTGAGAGGAAAGTGGACTCATATGATGTTGATTTTGAAGTTTTCAGAAGAGCTATTAAGGGAGGTATAGTGCCTCCATTTACATCACCAGAGGATGAACTTGAAACCCTTCTTCCTGCTAGAGAGAGTAGCTGGAGTGTTTTAAGGCGCAAAGTTTCATCTGCTACTACGAAGGAGTTTGTCTCAGCCCCTAAGCTACCCTTTCCAAGAGTTTATTCAGATTCCATGTTGTACATTCATACATCGGCAAATCCATCTCCATCCCTGTCACTGTCATCATCATCATCTTCACCCTTTTATGTATCACCGTGCTCCATTTCTTCTGATTCATGCACCCACTCAAAGTTCTTGCCCGAATTGTCAAAGGATTCTTCCTCTGAAGTTTTGGCTTCGGTTCCAGTACCTCCACCTTTGTCTAACTTTTCTAATTTGTCTCTATCTTCATGTTCTTCCCAACCAATGTCAAACAGTGCGGATATCCATGGTGTTCAGTTATCACATCCCTATTCTCAGTCAGCCTCTTTACCGTTGAAAAAACTATCTACTTCCCTTGCTGAACACAGAAGCAGTATGCCAAAGTCCTTGAAGTTGCCACTAATGAATGATAAGACACAGGGAATAAATAAACCTTCGACTTTTCATGCCAGTCCAGAAGCTGAAGGCCTTAAGGATACAGGTACGAATTCTCGTCAACAGTCTGAGCTGACATTACGTCCTGGCAATTTAATAGTTCATGATGGTGGCACTATTGCGCCATCGTTTTGCTGTTTTCTGATGCAGCAAATCACGTCTGTATTTGCTGCCTGTCATGGGGGCTATCTTGCCCGCTACCGTCAACAGAGCATGGAGACCCTTTTTACCCCACTGTTTTATGCCACCTCTCCCCCTTTCCATTGA 2145 0.4545 GMVGNDDVRARKVFWRSASWSAFHTAADANQPSGEAVIHFADPNSGDGHGRRFPPPHQNSKARSCLSLLQPLSIAPRSLEEWPKASSDDIGEWPQNATTPSGGRGNNGERLKLDLSSIQENHDNRNDTNGNNSIGLVKRDKIAFFDKECSKVGDHICLGGDAVAKDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVRELGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSLYDPLHLVPKMLTDPASSALDSRGAFIVHIPSAVYVWIGKNCEAIMERDARGAVGQIIRYEKVQGPIIMIKEGDEPSYFWDAFSKFLPLMNKSRNGVVNIKSCVKVWPGERKVDSYDVDFEVFRRAIKGGIVPPFTSPEDELETLLPARESSWSVLRRKVSSATTKEFVSAPKLPFPRVYSDSMLYIHTSANPSPSLSLSSSSSSPFYVSPCSISSDSCTHSKFLPELSKDSSSEVLASVPVPPPLSNFSNLSLSSCSSQPMSNSADIHGVQLSHPYSQSASLPLKKLSTSLAEHRSSMPKSLKLPLMNDKTQGINKPSTFHASPEAEGLKDTGTNSRQQSELTLRPGNLIVHDGGTIAPSFCCFLMQQITSVFAACHGGYLARYRQQSMETLFTPLFYATSPPFH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1675 714 ProSiteProfiles Dual specificity protein phosphatase domain profile. 148 290 IPR020422 GO:0006470|GO:0008138
Lal6g1675 714 SMART dsp_5 148 287 IPR020422 GO:0006470|GO:0008138
Lal6g1675 714 CDD DSP 149 283 - -
Lal6g1675 714 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 207 268 IPR000387 GO:0016311|GO:0016791
Lal6g1675 714 PANTHER MKPA PROTEIN 2 648 - -
Lal6g1675 714 Gene3D Protein tyrosine phosphatase superfamily 117 290 IPR029021 -
Lal6g1675 714 SUPERFAMILY Actin depolymerizing proteins 297 403 - -
Lal6g1675 714 ProSitePatterns Tyrosine specific protein phosphatases active site. 232 242 IPR016130 GO:0016311|GO:0016791
Lal6g1675 714 MobiDBLite consensus disorder prediction 91 105 - -
Lal6g1675 714 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 141 289 IPR029021 -
Lal6g1675 714 MobiDBLite consensus disorder prediction 627 649 - -
Lal6g1675 714 Gene3D Severin 300 395 IPR029006 -
Lal6g1675 714 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 2 648 - -
Lal6g1675 714 MobiDBLite consensus disorder prediction 38 62 - -
Lal6g1675 714 Pfam Dual specificity phosphatase, catalytic domain 158 286 IPR000340 GO:0008138|GO:0016311
Lal6g1675 714 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1675 Lal-Chr6 19530722 19532990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1675 3 184 Protein tyrosine phosphatase (PTP) family AT3G55270 54.737 4.50e-50 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1675 - - lang:109353381 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0592 18 5040695 5045927 Lal6g1675 6 19530722 19532990 LSH
Lal22g1343 22 16341914 16346951 Lal6g1675 6 19530722 19532990 LSH