Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1646 ATGCAATTCTCAAAGCTTGATGACTCACCCATGTTCCGGAAACAGATACAAGGTATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGGAGTTTAAAGTTTTACAAAGGGTGTAGAAAATACACTGAAGGACTCGGCGAAGCATATGACGGTGACATTGCCTTTGCAAGCGCACTAGAAACTTTTGGTGGAGGGCATAATGATCCGATCAGTGTGGCTTTCGGAGGACCTGTTATGACCAAGTTTACCATAGCCTTAAGAGAAATAGGGACATACAAGGAAGTTCTTCGTTCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCTTGAGGTCAAGGAAGCAAGAAAGCGCTTTGACAAGGCTAGCCTTATATATGATCAGACCCGTGAAAGGTTTCTGTCACTTAGAAAAGGCACAAAAAGTGATGTAGCTACTGCCCTAGAAGAGGAGCTTCATAATTCCAGATCTACATTTGAGCAAGCTCGATTTAATCTGGTTACTGCCTTGTCGAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGCGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTTTTGACTTATGCTCAGCAATCAAGAGAAAGGTCGAATTATGAGCAAGCAGTTCTCAATGAAAGAATGCAAGAGTACAAACGACAGATTGACCGAGAGAGTCGGTGGGCTTCAAATGGTTCTAACGGCTCTCCTAACGGAGATGGTATACAAGTGATCGGTAGAAGTTCACATAAGATGATAGAGGCAGTCATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGATATCTTTCAAAGCGCTCCTCAAACTTAAGGGGGGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTCTATTACTATCGTAAACAGATTGGCAAATCATCAGGGTCTAGCAGTCAGCATTCTAGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGCCGATGGCTGTCTTCTCATCATCATCACCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTCGATGCTGACCAATCAGATTTGAGGTTTTGCTTTCGGATCATTTCACCAACAAAGAACTACACTTTACAGGCAGAGAGTGCACTGGATCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCGTTGTTGAGTTCTCAGATTCCTGAAAGGTTGCTGCCTGCTAGTCCAAGGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGACCATGCTGCTGTTGAAGAATTTGCAGCGGAGAGAAGTCTCGCTTCTTCGCATTTGGAGCGCCCCTCAAGAAGTTTGCAGCAGCAGCGGTCCTGTATTAAAAGTGAAAAGCCGATAGATGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGACTGTGGTGCTCCTGAACCTGACTGGGCATCACTAAATCTAGGTGTTCTTGTCTGCATCGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTACACATATCAAAGGTCAGGTCTCTTACATTGGATTTTAAAGTGTGGGAACCTTCAGTGATAAGTTTGTTTCAGTCTCTTGGGAATACTTTTGCCAACTCGGTCTGGGAGGAAATATTGCAATCTAGAACTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTTGAACAATTCCGATAAACCGGTTATGCATTTCATCAGCAAACCATGTCAATCTGATTCTCTATCTGTGAAAGAAAAGTTTATCAATGCTAAGTATGCAGAGAAGCTTTTTGTCCGCAAGCCGAAGGACAACCAATACCGTGTCTTGGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAACGACAAAAAATCTGTATACCGATTCATCGTTAATTCTGAGGTAGACATCAATGTTGCGTATGATCAAGCATGCAGCAGCTCTTTGACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACAAGCCATGATCACGGTTCTGCTTTAGCAGTGAATGCATTCGATTGGTCCTCTGCCAGCTCTTTGAACTCGATGGGCACTAAAGAAGGTCCGGCTATGGGCAATCTAGATGGGTCTACCCTACTTCACCTTGCTTGTGAAGCTGCAGATATTGGAATGCTAGAGCTCCTCCTACAGTATGGTGCAAATGTTAACGCGGCTGATTTGAAAGGTCAAACGCCACTTCATCGCTGTATACTCAAAGGAAGAACTACAATTGCGAGATTATTGCTTTCTAGGGGAGCTGATCCTCGAGCTGTGGATGATGACGGAAGAACTCCTATTGAACTTGCCGCAGAGTCGAATGTCGATGACAGAGAAGTCGTTGCTCCATCGACTGATTCTAATGGATGA 2505 0.4343 MQFSKLDDSPMFRKQIQGMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLLEVKEARKRFDKASLIYDQTRERFLSLRKGTKSDVATALEEELHNSRSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAVLNERMQEYKRQIDRESRWASNGSNGSPNGDGIQVIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQIGKSSGSSSQHSSQRNSSELGSGLLSRWLSSHHHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPRGSGHHRSTSESSSFESSDFDHAAVEEFAAERSLASSHLERPSRSLQQQRSCIKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDFKVWEPSVISLFQSLGNTFANSVWEEILQSRTAFQVDLVPTGLNNSDKPVMHFISKPCQSDSLSVKEKFINAKYAEKLFVRKPKDNQYRVLVAQQIWEAVRANDKKSVYRFIVNSEVDINVAYDQACSSSLTLAKVMLLQEQTSHDHGSALAVNAFDWSSASSLNSMGTKEGPAMGNLDGSTLLHLACEAADIGMLELLLQYGANVNAADLKGQTPLHRCILKGRTTIARLLLSRGADPRAVDDDGRTPIELAAESNVDDREVVAPSTDSNG 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1646 834 MobiDBLite consensus disorder prediction 802 834 - -
Lal6g1646 834 ProSiteProfiles PH domain profile. 292 432 IPR001849 -
Lal6g1646 834 SUPERFAMILY Ankyrin repeat 672 820 IPR036770 -
Lal6g1646 834 Gene3D - 649 826 IPR036770 -
Lal6g1646 834 MobiDBLite consensus disorder prediction 802 820 - -
Lal6g1646 834 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Lal6g1646 834 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lal6g1646 834 Gene3D Arf GTPase activating protein 481 648 IPR038508 -
Lal6g1646 834 MobiDBLite consensus disorder prediction 443 465 - -
Lal6g1646 834 Pfam PH domain 294 431 IPR001849 -
Lal6g1646 834 Gene3D - 285 442 IPR011993 -
Lal6g1646 834 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Lal6g1646 834 SMART ANK_2a 741 770 IPR002110 GO:0005515
Lal6g1646 834 SMART ANK_2a 774 803 IPR002110 GO:0005515
Lal6g1646 834 CDD PH_ACAP 295 436 - -
Lal6g1646 834 Pfam Ankyrin repeats (many copies) 743 795 IPR002110 GO:0005515
Lal6g1646 834 PRINTS HIV Rev interacting protein signature 516 535 IPR001164 GO:0005096
Lal6g1646 834 PRINTS HIV Rev interacting protein signature 535 552 IPR001164 GO:0005096
Lal6g1646 834 PRINTS HIV Rev interacting protein signature 558 579 IPR001164 GO:0005096
Lal6g1646 834 ProSiteProfiles Ankyrin repeat profile. 774 806 IPR002110 GO:0005515
Lal6g1646 834 SMART arf_gap_3 504 649 IPR001164 GO:0005096
Lal6g1646 834 ProSiteProfiles Ankyrin repeat region circular profile. 741 772 - -
Lal6g1646 834 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 832 - -
Lal6g1646 834 Pfam BAR domain of APPL family 6 231 - -
Lal6g1646 834 CDD ArfGap 507 636 - -
Lal6g1646 834 MobiDBLite consensus disorder prediction 451 465 - -
Lal6g1646 834 ProSiteProfiles Ankyrin repeat region circular profile. 774 806 - -
Lal6g1646 834 ProSiteProfiles ARF GTPase-activating proteins domain profile. 504 649 IPR001164 GO:0005096
Lal6g1646 834 PANTHER CENTAURIN/ARF 1 832 IPR045258 GO:0005096
Lal6g1646 834 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Lal6g1646 834 SUPERFAMILY ArfGap/RecO-like zinc finger 504 644 IPR037278 -
Lal6g1646 834 SUPERFAMILY PH domain-like 293 449 - -
Lal6g1646 834 CDD BAR_SFC_plant 14 215 IPR035670 -
Lal6g1646 834 SMART PH_update 293 434 IPR001849 -
Lal6g1646 834 Pfam Putative GTPase activating protein for Arf 507 644 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1646 Lal-Chr6 19231784 19243060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1646 516 643 C2H2 Transcription Factor Family AT4G21160 41.860 2.81e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1646 K12489 - gmx:100789134 1410.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1646 6 19231784 19243060 Lal6g1646 6 19231784 19243060 ECH