Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1623 ATGTTGGAACATGACACTGCTAATGCCATCAGGACTGTGGCATGCAGTAACTGGGCGCCTCGCATGTGCGACACATGTCGTGCTGCGACATGCACTGTGTTCTGCCGCGTGGACTCTGCATACCTCTGTGCAGGATGTGATGTCAGAGTCCACGCGGTAAACCACTTGGCGTTGCAGCACGAACGCGTGTGGGTGTGCGAGGCATGCGAGCGCGCCCCTGCAGAGTTTCTCTGCAAAGCGGACGCAGCATCACTTTGCTCGTCTTGTGATGCTGACATCCACTCTGCTAACCTTCTTGCCAGCCGTCACCACCGCGTGCCCATCATGCCCATCTCTGGGTTCCTCTATGGCCCTCCCGCCACCCAAGAGGGTGGTGGGTTTATGAGGGGCCGGGGTTGTCACGGCGGCGGTGGCAGTGAGGTTGAAATGGATGAAGAAGATGATGGTGTTGGTGTGGAAGATGAAGATGAAGCAGCTTCATGGCTGTTACTGAATCCTATGAAGAACAACAACAACAGCAACAACAACAACAATGGATTCTTGTTTGGTGGGGAAGGTGATGAATACTTGGACCTTGTGGATTGTAATTCTTGTGATGGCAACAACAACAACAACTTCAATACTGCTACTGAACATTATGGTCAGCAGAACAAGCATGAACAACAACATTATGGCGTTCCTCAGAAAATCTATGGTGGGGACAGTGTTGTTCCAGTTCAGCAACACCAGCAAGGACAACATTTTCAACTTGGGTTGGAGTTTGAGTCACCCAAAGCTGGATTTAGTTACAATGGTTCTATTAGTCAAAGTGTTTCAGTTTCCTCAATAGATGTTGGTATTGTGCCAGAATCAACAATGAGGGATGTCTCAATGTCCCATTCTAGACCTTCAAAAGGGACAATTGACCTATTTTCAGGACCTTCCATTCAGATGCCTTGCCATCTTACTCCAATGGATAGAGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAAAAGACTAGAAAATTTGAGAAAACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAAACTCGGCCTCGCATAAAAGGTCGATTTGCTAAGAGATCGAATGTCGAAGCCGAAGTGGAACAGATGTTCTCCTCATCACTAATAACGGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1170 0.4803 MLEHDTANAIRTVACSNWAPRMCDTCRAATCTVFCRVDSAYLCAGCDVRVHAVNHLALQHERVWVCEACERAPAEFLCKADAASLCSSCDADIHSANLLASRHHRVPIMPISGFLYGPPATQEGGGFMRGRGCHGGGGSEVEMDEEDDGVGVEDEDEAASWLLLNPMKNNNNSNNNNNGFLFGGEGDEYLDLVDCNSCDGNNNNNFNTATEHYGQQNKHEQQHYGVPQKIYGGDSVVPVQQHQQGQHFQLGLEFESPKAGFSYNGSISQSVSVSSIDVGIVPESTMRDVSMSHSRPSKGTIDLFSGPSIQMPCHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRSNVEAEVEQMFSSSLITEVGYGIVPSF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1623 389 Pfam CCT motif 320 362 IPR010402 GO:0005515
Lal6g1623 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 389 IPR045281 GO:0009909
Lal6g1623 389 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Lal6g1623 389 CDD Bbox1_BBX-like 65 108 - -
Lal6g1623 389 CDD Bbox1_BBX-like 23 65 - -
Lal6g1623 389 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Lal6g1623 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 18 389 - -
Lal6g1623 389 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Lal6g1623 389 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Lal6g1623 389 SMART bboxneu5 66 108 IPR000315 GO:0008270
Lal6g1623 389 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1623 Lal-Chr6 18836551 18839503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1623 18 389 C2C2-CO-like Transcription Factor Family AT3G02380 52.972 6.69e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal6g1623 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1623 - - zju:107405905 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1623 6 18836551 18839503 Lal6g1623 6 18836551 18839503 ECH
Lal13g1739 13 16974534 16976451 Lal6g1623 6 18836551 18839503 PCT
Lal6g1623 6 18836551 18839503 Lal13g1739 13 16974534 16976451 PCT