Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1596 ATGGCTAGGTCTGGCATAGAGTATCAAGAAGAATTGGAAGAAGACGAAGAAGAAGAACACTTCACTGTAAACAATTCTTCTCCTCACAAAGTGAAAGTGGATGAACCCAACATGGGGAAGAGGGTAAATCCTCATCGTTCGAAACATTCAGAGACAGAACAACGTAGGAGATTTCAGGTTCTACGCGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCTTCCTTTTTGTTGGAGGTTATTCAGTATATTCACTTTCTACAGGAAAAGCTTCAAATTTATGAACAGTCTTATGAAGGGTGGAATCAGGAGCCAATGAAATTGATTCCATGGAGAAATCATAACAGACCTACAGAAAATAATACAGATCCTTCTCAAGCTATACAAAATGGGTCTGCTTATGAGAAAAATGAAGGCGTCTCTCTATCATTCCCCAAAAATATGCAGAATCCGATAGAGTCTGACTTGTCAACGACAACTATTCAGAAAGGCTACACCCCGGGTTTAACTACAGATGCAGTTCCGATGGGCATGCAAATGCAATTGGACATGTTTGATCCGGTTGTTAGCAGTGGTATGCCAACCCAACATCTGCAGCAACCTGTTTCTAGTGCTGACATCCCTTCCCATAACCAGCCTCAAGTGTGGCCTAGTAAAACAAATACGAGCAACTATGCCGTTCCCAATAATTCATTTAAGGAACAGGAGGAGCTGTCGATTGAAAGTGGATCCGAGAGCATCTCAAGTGCCTATTCTCAGGGAATATTAGATACTCTCAAGCAAGGGCTGCATTCTTCCGGCGTGGATTTGTCCCAGGTCACTCTTTCGGTGCAAATAGATGTTGGTAGACGAGCGAAAACTGGGTTGACCCCCTTGGCATCTGGCTTAAAGGGTCATGAAAAGCAAATTGTGAACAATGAAGCAATGGCATGTTCAGGAGTTGATTATTACAGTGAGGATTCTGAACAAAGTTTGAAGAGGGTCAGAAGAGAATGA 999 0.4224 MARSGIEYQEELEEDEEEEHFTVNNSSPHKVKVDEPNMGKRVNPHRSKHSETEQRRRFQVLRDLIPQNDQKRDKASFLLEVIQYIHFLQEKLQIYEQSYEGWNQEPMKLIPWRNHNRPTENNTDPSQAIQNGSAYEKNEGVSLSFPKNMQNPIESDLSTTTIQKGYTPGLTTDAVPMGMQMQLDMFDPVVSSGMPTQHLQQPVSSADIPSHNQPQVWPSKTNTSNYAVPNNSFKEQEELSIESGSESISSAYSQGILDTLKQGLHSSGVDLSQVTLSVQIDVGRRAKTGLTPLASGLKGHEKQIVNNEAMACSGVDYYSEDSEQSLKRVRRE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1596 332 Gene3D - 43 109 IPR036638 GO:0046983
Lal6g1596 332 PANTHER TRANSCRIPTION FACTOR BIM3 3 332 - -
Lal6g1596 332 Coils Coil 85 105 - -
Lal6g1596 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 88 IPR011598 GO:0046983
Lal6g1596 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 3 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lal6g1596 332 MobiDBLite consensus disorder prediction 195 224 - -
Lal6g1596 332 MobiDBLite consensus disorder prediction 1 54 - -
Lal6g1596 332 MobiDBLite consensus disorder prediction 33 54 - -
Lal6g1596 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 115 IPR036638 GO:0046983
Lal6g1596 332 SMART finulus 50 94 IPR011598 GO:0046983
Lal6g1596 332 CDD bHLH_AtBIM_like 46 113 - -
Lal6g1596 332 Pfam Helix-loop-helix DNA-binding domain 46 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1596 Lal-Chr6 18477288 18481567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1596 3 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 36.943 5.93e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g1596 HLH 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1596 - - gmx:100791730 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1596 6 18477288 18481567 Lal6g1596 6 18477288 18481567 ECH