Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1564 ATGAAATTTTCAAATGACATGGATGCACAAATTAATACACCTCCTGAGATATTGGACCAATGTAAAATATGCCATGATGAGGACAAAGATTCAAACATGGAGATTCCATGTTCTTGTTGTGGCACCTTGAAGTATGCACATAGAAAATGTGTCCAAAGATGGTGCAATGAGAAAGGGGACACTACCTGTGAGATTTGCCTACAGGAATTTAGTAGTGGCTATAATGCACCACAACCTTCCCTATTCCATTATGGTGATTCTCCAATAAATTTTGGATGGGGTATTCAGAATGATGATTTCATGGCAATGTTTAATGCTAATAATCATGAATTGTTAGAATCTGAATTGGAATATTCATCAGCACCCTCTCCAAGTATCCTTAAATGTTTCAGAATCATTGCCATTATTTTAGTGTTGTTGAGAGCCATTGAGATGGTTGTACCAATCCATTTATTAGTTAAAGCTATCATTGGGATCCAAAGGCTTTAG 489 0.364 MKFSNDMDAQINTPPEILDQCKICHDEDKDSNMEIPCSCCGTLKYAHRKCVQRWCNEKGDTTCEICLQEFSSGYNAPQPSLFHYGDSPINFGWGIQNDDFMAMFNANNHELLESELEYSSAPSPSILKCFRIIAIILVLLRAIEMVVPIHLLVKAIIGIQRL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1564 162 Pfam RING-variant domain 21 66 IPR011016 GO:0008270
Lal6g1564 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 78 IPR013083 -
Lal6g1564 162 Pfam Protein of unknown function (DUF3675) 73 142 IPR022143 -
Lal6g1564 162 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 5 140 IPR033275 -
Lal6g1564 162 CDD RING_CH-C4HC3_MARCH 21 66 - -
Lal6g1564 162 SUPERFAMILY RING/U-box 19 70 - -
Lal6g1564 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 5 140 - -
Lal6g1564 162 ProSiteProfiles Zinc finger RING-CH-type profile. 13 73 IPR011016 GO:0008270
Lal6g1564 162 SMART ringv_2 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1564 Lal-Chr6 18023934 18027226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1564 8 66 C3H Transcription Factor Family AT2G37950 41.935 4.76e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1564 - - gmx:100806609 185.267