Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1549 ATGGAAGGGAAAACCCAAAAAATGTGCAGCTTCAATACTCAAACAAATGAGCTGCAAAATTCAAGTACCCAAAAGCAATTCTTTTCTCTTTCTTTTCCAAAGCTTGCTGAGAACTACCCTCATGGCTTTCCCAAAAAGGTATTTGCAGAGATTATAGGGACATATATATTGGTGTTTGTGGGAAGTGGTTCTGCTGCACTGAATGTTATTGATGAAAACAAAGTTTCAAGATTGGCAGCTTCAGTTGCAGGAGGATTAATAGTGACTGTGATGATTTATTCAATTGGTCACATCTCAGGAGCACACATGAACCCAGCTGTGTCCTTAGCTTTTGCTGCTTTCAGGCATTTTCCATGGACACAGGTTCCATTTTACATTGCAGCACAACTCACAGGAGCTATTTCTGCTTCATATACTCTGCGTGTGTTGTTAAAGCCATCGAGAGAGCTGGGGGCAACATCGCCTTCGGGATCAAATATTCAAGCATTGATCATGGAAATGGTGGCCACATTCACCATGGTGTTCATATCCACTGCCATGGCCTATGACACAAAAGCTATAGGAGAGCTAGCTGGAGTTGCAGTAGGTTCTTCAGTTAGCATCGCGAGCATCGTTGCTGGGCCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCCACTGTATCTTACAAGGGAATTTGGGTCTATCTAGTTGGACCAATTATTGGGGCACTTTTAGGGGCATGGAGTTATGGTGCTATTGAAGAGACTGATAAGCCAGCTTCTGCAATCTCACTATCTACCCTTTCAATCAAGCTATGCCGCCGCCCGACGATTAACGAAACCGAGCAAGTTGGTAACAACAACCACCTCAGTTCAGTGTGA 882 0.4399 MEGKTQKMCSFNTQTNELQNSSTQKQFFSLSFPKLAENYPHGFPKKVFAEIIGTYILVFVGSGSAALNVIDENKVSRLAASVAGGLIVTVMIYSIGHISGAHMNPAVSLAFAAFRHFPWTQVPFYIAAQLTGAISASYTLRVLLKPSRELGATSPSGSNIQALIMEMVATFTMVFISTAMAYDTKAIGELAGVAVGSSVSIASIVAGPISGGSMNPARTLGPAIATVSYKGIWVYLVGPIIGALLGAWSYGAIEETDKPASAISLSTLSIKLCRRPTINETEQVGNNNHLSSV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1549 293 SUPERFAMILY Aquaporin-like 39 257 IPR023271 -
Lal6g1549 293 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lal6g1549 293 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 15 268 - -
Lal6g1549 293 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 CDD MIP 45 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 Pfam Major intrinsic protein 43 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g1549 293 PANTHER AQUAPORIN NIP2-1 15 268 IPR034294 -
Lal6g1549 293 Gene3D Glycerol uptake facilitator protein. 4 261 IPR023271 -
Lal6g1549 293 TIGRFAM MIP: MIP family channel proteins 49 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1549 Lal-Chr6 17755382 17762170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1549 45 266 Major Intrinsic Protein MIP AT5G37820 49.776 1.65e-73 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1549 K09874 - gmx:100788071 346.28