Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1533 ATGCCCAGCTTTTCCTCTCTCTCTGGGTCGATTGGTCGACGGTTCTTTGGAAGGAATCTTGATAGCACAGACAGTAGTAGCGAGACTGTCGTCGTGCACGACGACAGTCAAGCAGTTGACACAGTGGAGTGTTATGCCTGCACACAGTTAGGGGTGCCGGCGTTCCACTCCACTAGTTGTGATAGCTATCAACAACCGCAATGGGAGGCATCTGCTGGCTCCTCCTTAGTTCCAATTCAGAATCAGCCCAAGGGCTCGACTGTCCGAGTCAAATCTCGGATCAACTCGGGTCCTTTCGGGCAGGTTCTGGATCCAAGAACGAAGCGTGTGCAAGTGTGGAACCGCGCGCTACTTCTAGCGCGTGGGGTAGCACTTGCAATTGATCCACTCTTCTTCTACGCACTGTCCATCGGTAGGGAGGGAACGCCGTGCTTGTATATGGACGGGTGGCTGGCGGCGGTGGTGACGGTGGCACGGTCAGTTGTGGATGCGGTGCATTTGTTCCACCTGTGGCTGCAGTTCAAGATGGCGTATGTGTCGAGAGAGTCACTGGTTGTTGGGTGTGGGAAGCTCGTGTGGGATGCACGTGACATTGCAGCACATTATCTTCGATCTCTCAAAGGGTTCTGGTTCGACTTGTTTGTGATTCTCCCAGTTCCACAGACTGTATTCTGGTTGATAGTACCAAAATTGATAAGGGAAGAGCAACTTAAAATTATCATGACCATAATGCTCTTAATTTTTTTGTTCCAATTTCTCCCGAAGGTTTACCACTGCATCTGCATGATGAGAAGAATGCAAAAGGTCACAGGCTACATTTTTGGCACTATTTGGTGGGGCTTTGCTCTCAATCTCATAGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAGCGCGTGGCGTCGTGCATTCGGCAGCAATGTGAGAGAACTCATGGATGCAATCTCTCTTTGTCTTGTGAAGAAGAGGTATGCTACCAATTTATGCCATTAGATGGATCAGTAGGAAATCCATGTGGTGGAAACTCAACAATTACTGCAAGAAAGCCTTTGTGCTTAAATGGTGAAGGACCTTTCAAATTTGGAATTTACCAATGGGCACTTCCTGTCATATCCAGCAACTCCTTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGCAATGATCTTGAACCCACAAGTAATTGGCTAGAAGTGATTTTCAGCATATGCACCGTACTTAGTGGACTACTACTTTTCACTTTGTTGATTGGTAACATCCAGGTATTCTTACATGCAGTCATGGCAAAGAAGAGAAAAATGCAGCTGAGAAGCCGCAACATGGAATGGTGGATGAGGCGAAGACAGTTACCGTCGCGATTAAAGAAAAGAGTTCGACATTTTGAACGTCAGAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAATTGATCAAAGACTTGCCTGAGGGACTTAGAAGAGACATCAAACGTTATCTTTGTCTTGACCTCATTAAAAAGGTCCCTTTATTTCACAATCTGGATGATCTTATCCTTGACAACATCTGTGACCGAGTTAAGCCCCGAGTCTTATCAAAAGATGAAAAGATAATAAGAGAAGGTGACCCAGTTCCAAGAATGGTATTCATTGTTCGTGGCCGAATAAAGCGCAACCAAAGCCTGAGCAAAGGTATTGTAGCCTCTAGTATCCTTGAACCAGGAGGATTCTTAGGTGATGAGTTACTTTCATGGTGTCTTCGTCGACCTTTTATCGAAAGACTTCCAGCTTCTTCAGCCACATTTACATGTCTTGAATCAGCTGAAGCATTTGTTCTTGATGCTGAACATTTAAAATACATCACTGATCATTTTCGATACAAATTCGCGAATGAGAGGTTGAAGAGAACAGCAAGATATTACTCATCTAATTGGAGAACATGGGCTTCAGTTAATATTCAAATTGCTTGGAGACGTTATAGGCAAAGGACTAGAGGTTCAGTGATGACCCTTATAAGGGACAATGATGTTGGAAGCACTGAAAGAAGGCTCTTGCAATATGCTGCAATGTTTATGTCAATTAAGCCTCATGATCATCTTGAATGA 2127 0.4495 MPSFSSLSGSIGRRFFGRNLDSTDSSSETVVVHDDSQAVDTVECYACTQLGVPAFHSTSCDSYQQPQWEASAGSSLVPIQNQPKGSTVRVKSRINSGPFGQVLDPRTKRVQVWNRALLLARGVALAIDPLFFYALSIGREGTPCLYMDGWLAAVVTVARSVVDAVHLFHLWLQFKMAYVSRESLVVGCGKLVWDARDIAAHYLRSLKGFWFDLFVILPVPQTVFWLIVPKLIREEQLKIIMTIMLLIFLFQFLPKVYHCICMMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVAGGCWYVLAIQRVASCIRQQCERTHGCNLSLSCEEEVCYQFMPLDGSVGNPCGGNSTITARKPLCLNGEGPFKFGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICTVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRSRNMEWWMRRRQLPSRLKKRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPRVLSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGIVASSILEPGGFLGDELLSWCLRRPFIERLPASSATFTCLESAEAFVLDAEHLKYITDHFRYKFANERLKRTARYYSSNWRTWASVNIQIAWRRYRQRTRGSVMTLIRDNDVGSTERRLLQYAAMFMSIKPHDHLE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1533 708 ProSiteProfiles cAMP/cGMP binding motif profile. 518 597 IPR000595 -
Lal6g1533 708 CDD CAP_ED 518 628 IPR000595 -
Lal6g1533 708 SMART cnmp_10 518 644 IPR000595 -
Lal6g1533 708 Gene3D Jelly Rolls 516 634 IPR014710 -
Lal6g1533 708 Gene3D Helix hairpin bin 444 509 - -
Lal6g1533 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 23 708 - -
Lal6g1533 708 SUPERFAMILY Voltage-gated potassium channels 105 439 - -
Lal6g1533 708 Gene3D - 144 441 - -
Lal6g1533 708 Pfam Ion transport protein 111 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal6g1533 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 708 - -
Lal6g1533 708 SUPERFAMILY cAMP-binding domain-like 445 632 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1533 Lal-Chr6 17359858 17371325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1533 35 708 Ion Channels AT5G15410 77.680 0.0 1049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0537 18 4462905 4471489 Lal6g1533 6 17359858 17371325 LSH