Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1525 ATGGGTTGCGTTAACTCCAAGAAAGCGGTTGCCGGAGACAATTCTTCGCCACCACCACAACCGCCGCTGCCATCGCAATTGCGATCGAGTTCGCGAAACCGGAGCAATGTATCTAGCCGCCACAAAAACACGGTCGCCGAGCCGGTGGTGGTGGCGGAGGCGGCGGCCGTGGCTGTGATGACGTCAAGAGGAGGCAGTAATTCCGAGGCGGCGGTTTCGGAGAGAAAGGAAAGTGAGGCGAAATTGGAGGAAAGGGTAATTGAAAATGAAGGAAGCATGAGGGCAAAAGGGTCATTGAACATGAGGGTTGGGATATCTTATAGGTTTGTGGAAGCAGAACAGAATGCAGTTGGTTGGCCACCTTGGCTAACATCTCTTGCAGGGGAAGCTATTCAAGGGTGGGTCCCACTAAAGACTGGTTCTTATGAGAAATTAGATAAGATCGGAGAAGGTACTTATAGCAGTGTGTTCCAAGCACGTGAAATCGAAACTGGGAGGATAGTTGCCCTGAAGAAGGTGCGCTTTAACACTTTTCAACCTGAGAGTATTAGGTTCATGGCAAGAGAAATAATAATTCTTCGTGCACTTGACCACCCAAACATCATGAAGTTAGAGGGTATAATTACTTCCCATCTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTTCTATCTTCTCCCAACATCAAGTTCAGTGACTCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGAATTGAGCACTGTCACCTTCGAGGTATTATGCACCGGGACATTAAAGTATCCAATATATTAGTAAACAATGAAGGCGTTCTCAAGATAGGAGATTTTGGATTAGCTAATGCAGTTAGTCCAAATAACAAGCATCCTTTAACAAGTCGTGTAGTGACTCTATGGTACCGCCCTCCTGAGCTCTTGATGGGATCAACACAATATGGAGTTTCAGTGGATCTGTGGAGTGTAGGTTGTGTATTTGCAGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTTTGTGGGTCTCCACCTGCTGAGTTCTGGAAAAAGTGTAAGCTTCCTCTTGCAAGAATGTTTAAGCCTCAAACTAATTACGAAAGCACTTTTCAAGAGAGGTGTAATGGTCTTCCTGTAACTGCTGTAAACCTAATTGAGACTTTACTGTCCATTGACCCCTACAAGCGTGGGACTGCCTCCTCTGCACTAATATCTGAGTATTTCAACACCGAGCCATATGCCTGTAGTCCATCAATCTTACCGAAGTATCCGCCAAGCAAAGAGATGGATGCTAAAATTAGGGAAGATGCACACAGGAAAAAGAATGGGGGTAAAGTAGGAGAGGCTGTAACGTCAAGAAAACAAAGACAAGCCTATAAATTCTTGCAAGACCCGAACAATTACAGCAAACCAGCTATAAAAGAGGAAATGCAGAACATTTCTCAAAATGCTTCTAAAAATGATGGTAAAACACATCTTACAAAGGGTAAAGTAGGATCCACGCACCAAAGCCACCAATTGAACCGTTTATACTCAGGACCAGCACCAGTTACAGGATCTAGTGGCTTTACATGGACAAAAAGGAGAAAACCAGCTGCTTCATCCACATTATCAGATAGCTCAAGAAGCAAAATAAGTGCACTGGATCCAACCTTTGCAAAAGGAACATATGATTTAACAAAACATGGGATAGATGTTTCAAAAAGAAAATATAGTTCCAGCTCAAGGCGTCAGGATGAGAATTCCAAGCATGTAGTCCATAAGAACCCTGATCGTCATGATCGTCGAGGGTCGTTTGATTCAGCTGATACATACCATTCAAATCATTACCTGGACTTCATTCCCACACAAAAAACAGACACTCAAGTGAGCAGCGAGGGCCACAGGAAGCATGGTGAGCCTATGGAACAATCAGTACCAATGGTGATCCAAGAAAATAAAAATGATGATTTGTTTCATTGGGATGAAAATACTATGCGGCGATCAGTTCGTAGATCAAGGTTTGGAAGAGACAAATGA 2073 0.4337 MGCVNSKKAVAGDNSSPPPQPPLPSQLRSSSRNRSNVSSRHKNTVAEPVVVAEAAAVAVMTSRGGSNSEAAVSERKESEAKLEERVIENEGSMRAKGSLNMRVGISYRFVEAEQNAVGWPPWLTSLAGEAIQGWVPLKTGSYEKLDKIGEGTYSSVFQAREIETGRIVALKKVRFNTFQPESIRFMAREIIILRALDHPNIMKLEGIITSHLSNSIYLVFEYMEHDLAGLLSSPNIKFSDSQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANAVSPNNKHPLTSRVVTLWYRPPELLMGSTQYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPAEFWKKCKLPLARMFKPQTNYESTFQERCNGLPVTAVNLIETLLSIDPYKRGTASSALISEYFNTEPYACSPSILPKYPPSKEMDAKIREDAHRKKNGGKVGEAVTSRKQRQAYKFLQDPNNYSKPAIKEEMQNISQNASKNDGKTHLTKGKVGSTHQSHQLNRLYSGPAPVTGSSGFTWTKRRKPAASSTLSDSSRSKISALDPTFAKGTYDLTKHGIDVSKRKYSSSSRRQDENSKHVVHKNPDRHDRRGSFDSADTYHSNHYLDFIPTQKTDTQVSSEGHRKHGEPMEQSVPMVIQENKNDDLFHWDENTMRRSVRRSRFGRDK 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1525 690 Pfam Protein kinase domain 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1525 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Lal6g1525 690 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Lal6g1525 690 SUPERFAMILY Protein kinase-like (PK-like) 136 431 IPR011009 -
Lal6g1525 690 Gene3D Transferase(Phosphotransferase) domain 1 225 465 - -
Lal6g1525 690 PANTHER CYCLIN-DEPENDENT KINASE 72 582 - -
Lal6g1525 690 ProSiteProfiles Protein kinase domain profile. 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1525 690 MobiDBLite consensus disorder prediction 26 43 - -
Lal6g1525 690 Gene3D Phosphorylase Kinase; domain 1 131 224 - -
Lal6g1525 690 MobiDBLite consensus disorder prediction 585 620 - -
Lal6g1525 690 MobiDBLite consensus disorder prediction 1 46 - -
Lal6g1525 690 MobiDBLite consensus disorder prediction 636 658 - -
Lal6g1525 690 SMART serkin_6 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1525 690 MobiDBLite consensus disorder prediction 502 561 - -
Lal6g1525 690 PANTHER CELL DIVISION PROTEIN KINASE 72 582 - -
Lal6g1525 690 CDD STKc_CDK9_like 142 426 - -
Lal6g1525 690 MobiDBLite consensus disorder prediction 514 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1525 Lal-Chr6 17208411 17223967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1525 134 458 Core Cell Cycle Gene Families AT5G10270 45.882 9.74e-101 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal6g1525 Pkinase 5.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1525 - - lja:Lj1g3v2982400.1 909.442