Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1516 ATGGCAGCTTGCATATTCACGGTGTCACATAACGGAAACGGAGATTTCCAAACGGTGCAGGAAGCAATCGACGCCGTGCCGCTCGGAAACACTCGGCGGACGTTGATCCGTGTTGCGCCGGGAATCTACCGGCAACCGGTTTACATTCCGAAGAGCAAGAATTTCATAACTCTTGCTGGTTTGCGCCCTGAAGACACTCTTCTTACTTGGAATAACACCGCTGCAGGAATCGATCACCACCAACTTGCTAGGGTGATAGGGACTGGGACATTTGGCTGTGGAAGTACCATTGTGGAAGGGGATGACTTTATTGCCGAGAATATTACTTTTGAGAATTCTTCACCTCAGGGTTCAGGGCAAGCAGTGGCAATTAGAGTAACAGCAGATAGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTATGGAAAACAATATTTGAAAGATTGCTATATTGAAGGAAATGTGGACTTCATCTTTGGCAATAGCACTGCTCTTTTGGAGCACTGTCATATCCACTGCAAATCTGCTGGGTTCATAACCGCACAAAGCAGAAAATCTTCACAGGAAACAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATGCATATCTTGGACGACCATGGGGACCTTTTGGAAGAGTGGTCTTTGCGTACACATACATGGATTCATGCATAAAGCATGTTGGATGGGATAATTGGGGGAAAACAGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGTCACCTGGGGCTGTAGTATATTCCAAGGGTTGGGCTGTTCGCCCATTAAAGTGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCCCTGCACGTTAAATGTGTATAATATTAAGTCACTTGTATTAGTTTTTCTAAATGTTCCATCGAGGTCATCTGCTATAGCGTTTTTGGGGTCGGCTGTTCTGCTCGCTATTTGGGATTGGCTATTTAATAAGTGTTTTGGTCCTGGTTGCTGTGCATCCAAACGAGTAACATGGTGTAGAGAATTGATGGATGAAGAAACAGACCAGTTTCTGATGCATCCTTTTATTGACCCAGAACCTGATAGACCTTGGCTTGCTCAAAGAATGGCTTTGAGGATTCCATATTCTGCTTAA 1308 0.4572 MAACIFTVSHNGNGDFQTVQEAIDAVPLGNTRRTLIRVAPGIYRQPVYIPKSKNFITLAGLRPEDTLLTWNNTAAGIDHHQLARVIGTGTFGCGSTIVEGDDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGNVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDSCIKHVGWDNWGKTENERSACFYEYRLIFPKSSHRREGLAPRCRLFVTWGCSIFQGLGCSPIKVVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHPCTLNVYNIKSLVLVFLNVPSRSSAIAFLGSAVLLAIWDWLFNKCFGPGCCASKRVTWCRELMDEETDQFLMHPFIDPEPDRPWLAQRMALRIPYSA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1516 435 PANTHER PECTINESTERASE 381 434 - -
Lal6g1516 435 PANTHER PECTINESTERASE 1 268 - -
Lal6g1516 435 SUPERFAMILY Pectin lyase-like 3 265 IPR011050 -
Lal6g1516 435 Pfam Pectinesterase 7 263 IPR000070 GO:0030599|GO:0042545
Lal6g1516 435 Gene3D - 3 278 IPR012334 -
Lal6g1516 435 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 381 434 - -
Lal6g1516 435 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1516 Lal-Chr6 17139297 17148391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1516 5 255 Carbohydrate Esterase AT5G55590 41.762 4.63e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1516 K01051 - gmx:100786786 523.472