Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1290 ATGGGTTATACATGTGATTTTTGTGGAGAGCAGAGGTCCATGGTGTACTGCCGCTCTGATGCTGCTTGCTTATGTTTGTCATGTGATAGAAATGTTCATTCTGCTAATTCCCTTTCGAAGCGTCACTCGCGAACCCTTTTATGTGAGAGATGTAATTCACAACCTGCCGTGGTGAGGTGTGCTGAAGAGAAAGTTTCACTTTGTCAAAACTGTGATTGGCTGGGTCATGGTTCGTCTACGTCTTCTTCAACACATAAGAGGCAAACAATCAATTGCTACTCTGGCTGTCCATCATCAGAAGAATTGTCTTCTATATGGTCATTTATGTTAGATATCTCTTCTATGAATGGATCTTCATGTGACCAGGAACTAAGTTTAATGAGTATTAATGAGAACAGCAACAAGAGTTCTCGGGTTCCTCCAGAAAATCAGAATGTGACTGGTTCAGATCAAGTTAATAATCCACTCGGTAAGGATAAGTCTTGGGTTGGTGCTTCTTCGAAGTCTGAGTCGAGCACAGAATCTCCTGTTCCGGACCATCCAGCTGGACCTTCAAATCAATGTCCACCGAAGTTCTACTTTCCTGGTACAAAGTGCCCTTCAATATGTGAAGATAATATGTATCCTGATTTTGAAATGGGTGAAGCGGATATAAATCTTGAGAACTATGATGAACTTTTTGGCATGACTCTCACTCATTCAGAAGAGCTTTTTGAAAATGGTGGATTTAATAGCTTGTTTGGGACAAAGGACATATCTGCTGAAGATTCCGATTGTCTGGGTGCTGTTGCTGCTGAGTCATCGGTTGAACTGGTCAGTGCAATTCAACCGGCATGCAGCAACGCAGAATCTGCAGATTCCATATTGAGTACAAAAACTGAGCCAATTATTTGTTTTACGCCAAGGCAAGTCCCATCGAACATATCTTTTTCCGGAATTGCGGGAGAGAGTAATGCTGTAGACTATCAAGACTGCGGGGCTTCTTCAATGCGTCTCATCGGAGAGCCTCCTTGGCATCCACCTTTCACTGAGAACTCCCTACATTATGCATCTAACCGCAGTAATGCTGTCATGCGTTATAAGGAAAAGAAGAAGATACGCAAGTTTGACAAAAGAGTGAGATATGCCTCTCGCAAAGAACGAGCTGATGTCAGAAAGCGCGTGAAAGGCCGGTTCGTCAAAATTGGCGATGCCTACGATTATGACCCTTTGGGCCCAACCAGAAGCTACTGA 1233 0.4331 MGYTCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANSLSKRHSRTLLCERCNSQPAVVRCAEEKVSLCQNCDWLGHGSSTSSSTHKRQTINCYSGCPSSEELSSIWSFMLDISSMNGSSCDQELSLMSINENSNKSSRVPPENQNVTGSDQVNNPLGKDKSWVGASSKSESSTESPVPDHPAGPSNQCPPKFYFPGTKCPSICEDNMYPDFEMGEADINLENYDELFGMTLTHSEELFENGGFNSLFGTKDISAEDSDCLGAVAAESSVELVSAIQPACSNAESADSILSTKTEPIICFTPRQVPSNISFSGIAGESNAVDYQDCGASSMRLIGEPPWHPPFTENSLHYASNRSNAVMRYKEKKKIRKFDKRVRYASRKERADVRKRVKGRFVKIGDAYDYDPLGPTRSY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1290 410 Pfam CCT motif 353 394 IPR010402 GO:0005515
Lal6g1290 410 MobiDBLite consensus disorder prediction 164 180 - -
Lal6g1290 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Lal6g1290 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Lal6g1290 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal6g1290 410 CDD Bbox1_BBX-like 5 47 - -
Lal6g1290 410 MobiDBLite consensus disorder prediction 132 187 - -
Lal6g1290 410 MobiDBLite consensus disorder prediction 132 156 - -
Lal6g1290 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lal6g1290 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
Lal6g1290 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lal6g1290 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1290 Lal-Chr6 12174504 12179939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1290 1 410 C2C2-CO-like Transcription Factor Family AT3G07650 55.450 1.57e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal6g1290 CCT 3.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1290 - - gmx:100796748 598.971