Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1224 ATGACATTCAGAAAGGGTGACAGCGACGGTGCCAGTCCCGGCAAAATCTTCATCGGAGGGTTATCCAAAGACACCACCATGGATACGTTCGTGAAGTACTTTGAGAAGTACGGAGAGATAACGGACTCAGTGATAATGAAGGATCGTGAATCGGGTCGACCCAGAGGTTTCGGCTTCATCACATACTCGGATCCTTCAGTTGTTGACCAAGTCATTCAGGAGGACCATGTCATCGATGGCAAACAGGTGGAGATCAAGAGGACCATTCCAAAGGGTTCATCTCAAGCTAATGTCTACAAAACAAAGAAGATTTTTGTTGGTGGTATTCCAACAGCAGTATCTGAAGATGAACTCAAGGATTTCTTCTCGAAGTATGGGAAGGTTGTGGAGCATGAAATAATACGTGACCACACTACAAAACGTTCTCGGGGTTTTGGATTTATAGTTTTTGACAATGATAAGGTTGTTGATAACATCTTGTCGGATGGGAATATGATTGATATGGCTGGTAGTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAGTCCTCAAACCCAGCTTCTCTTCCTCCTTTTTCTCGTGACTCTAGGTCACGTTCGTATTATGATGGTTTTGGTGGATTTGGCGATTCTTATAGAAGTTTTTCTAGTAGCAGTTATGGCCCTGGTTCCTATAGGTCTCCTGGAGGTTTTGGTGCTAGGTATGATGATTATGGTGGGTACGGTGGTGGTGATGACTTCAGTGGTGGTTTTGGGGGTTATGGTGGTGCTGCTGGTGGATATGTAGGTTACCGAGCAGACTCATCATTTGGCTACTCTAGTCGCTATGGTTCCTACATGGGGGCCCTTGGTGGTGGATATGGTAGTGGTGGGTTAGGTGCTTATGGACGAGGTGCTTTGGGCTATGGAAGCTATGGTGGTCCTTGCACCGATGGGGGTTATGAGTCAGGCCCTGGTGCTGGTTACGGTGGGGCTGGAGGACTATATCCTAGTAGGGGAAGTTATGGTGGTAGTAGTCGTTACCATCCTTATGCAAGATAG 1041 0.4649 MTFRKGDSDGASPGKIFIGGLSKDTTMDTFVKYFEKYGEITDSVIMKDRESGRPRGFGFITYSDPSVVDQVIQEDHVIDGKQVEIKRTIPKGSSQANVYKTKKIFVGGIPTAVSEDELKDFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNDKVVDNILSDGNMIDMAGSQVEIKKAEPKKSSNPASLPPFSRDSRSRSYYDGFGGFGDSYRSFSSSSYGPGSYRSPGGFGARYDDYGGYGGGDDFSGGFGGYGGAAGGYVGYRADSSFGYSSRYGSYMGALGGGYGSGGLGAYGRGALGYGSYGGPCTDGGYESGPGAGYGGAGGLYPSRGSYGGSSRYHPYAR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1224 346 Gene3D - 93 216 IPR012677 -
Lal6g1224 346 Gene3D - 14 92 IPR012677 -
Lal6g1224 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 162 IPR000504 GO:0003723
Lal6g1224 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 74 IPR000504 GO:0003723
Lal6g1224 346 PANTHER OS08G0320100 PROTEIN 1 346 - -
Lal6g1224 346 SMART rrm1_1 15 86 IPR000504 GO:0003723
Lal6g1224 346 SMART rrm1_1 103 176 IPR000504 GO:0003723
Lal6g1224 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Lal6g1224 346 SUPERFAMILY RNA-binding domain, RBD 102 260 IPR035979 GO:0003676
Lal6g1224 346 MobiDBLite consensus disorder prediction 176 195 - -
Lal6g1224 346 SUPERFAMILY RNA-binding domain, RBD 11 94 IPR035979 GO:0003676
Lal6g1224 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Lal6g1224 346 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1224 Lal-Chr6 9785662 9788657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1224 4 152 Eukaryotic Initiation Factors Gene Family AT1G71770 27.545 1.16e-12 67.0