Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1187 ATGGCTTCACCCAATTACGGTGTTCGTGAACAGGATCAGTACATGCCAATCGCGAACGTGATAAGGATCATGCGAAGAATTCTTCCCACACATGCAAAAATCTCAGACGATGCAAAAGAAACAATCCAAGAATGTGTCTCTGAGTACATTAGTTTCATCACTGCTGAAGCAAACGATAGGTGCCAACGTGAGCAAAGGAAAACAGTAACAGCAGAAGATGTTCTATTTGCAATGGGTAAGCTTGGTTTCGATGATTACGTTGGTCCTCTTTCTCTTTACCTTCAACGCTATCGTGAGAGTGAAGGTGAACCTGCTGCTGTTAGAAGAATTGCTAATTATGGCTCTCATCATTCCCTCCAACCACCACCACCGCCACCGCCACAGCAACAACCACTTGGTGGTGGTGGTGGTGGTGGTTTGTCTTATGGATCTGGTATGTTTTATAGAGATGATGGGTCTGGTGGGTCTGGGAATAATAACATTGCTGCTTTTGATCCTTTTGCTCATATCAAACGTGATCGTATGTGA 528 0.4432 MASPNYGVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLFAMGKLGFDDYVGPLSLYLQRYRESEGEPAAVRRIANYGSHHSLQPPPPPPPQQQPLGGGGGGGLSYGSGMFYRDDGSGGSGNNNIAAFDPFAHIKRDRM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1187 175 PRINTS CCAAT-binding transcription factor subunit A signature 42 60 - -
Lal6g1187 175 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lal6g1187 175 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lal6g1187 175 SUPERFAMILY Histone-fold 11 104 IPR009072 GO:0046982
Lal6g1187 175 MobiDBLite consensus disorder prediction 114 163 - -
Lal6g1187 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal6g1187 175 Gene3D Histone, subunit A 4 119 IPR009072 GO:0046982
Lal6g1187 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 78 IPR003958 -
Lal6g1187 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 7 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1187 Lal-Chr6 9257323 9257898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1187 8 103 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.417 2.38e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal6g1187 CBFD_NFYB_HMF 6.1e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1187 K08065 - gmx:547959 199.904