Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1186 ATGACATCTCAAGACAATGAAAATTGGCCAATAGAATTTGTTAGAGATTTTGATGTACCATCTAATGACCATGATATTGAAGAACTACAAAGAGATCATTTGGGTCATGCTGAAAAAACCAACGACTCAACTCCTTACAATGGACAAATATTTAACTCTGAAGAAAATGCATACATTTTTTACTGTTTATTTGCAAAGAGATGTGGTTTTTCTGTTAGAAGAGGTCACACTTATAAACGTAATAATTCAGATAACATTGAGTATATTTACAGAAGAGAGTTCATTTGTCATCGAGCTGGTATTGTTAACCAACAAAAAATTATTGAACCAGAAAAACAAAGGAAACGAAAAAGTTCAAGATGCAATTGTAGTGCAAAATTGTTTATTAGTAAAAGACAAATTAACTGCGAAGAACGTTGGGTGGTTACATATTTTAGTAATTCTCATAACCATGCATTATTGGATGATAAAGAAGTTCGGTTTCTTCCTGCTTATCGTGACATACCTAACAATGATCAAAGTCGTATATTACTGTTATCTAAAGCTGGTTGCTCAATAAGTATTATAATGAGAGTGCTTGAATTGGAGAAAGGAATAGAGGCAGGCCATTTGCCATATTTGGAGAAAGATATAAGAAATTTTTTACAATCTGAAAGTAGTGTTGGTAATGAAAATGATGCTTCAGACTTTCTCAAATTATGCAAAAAATTGAAAGATATAGACGATGTCTTTCAATATGATTTCACCATGGATGAAAGTAACAAATTGGAGCATATTATTTGGGTATTCGGTGATTCAATTCGAACATATGAAGCTTTCGGAGATGTGGTTGTCTTTGATACTACATATCGAATAAATCGTTATGATATGCCTCTTGGACTATGGGTCGGGGTTGATAATCATGGTAATTCAATTTTCTTTGGATGTGTTCTATTGCGAGATGAGAAGATACCTTCTTTCAGATGGGCATTAAAGACGTTTTTACACTTTGTCAAGGGAAAATACCCAAGAACAATTCTCACGGATCAAGACCATGCACTTAAAGAAGCTATTTCAACAGAATTGTCAAACACAAAACATGCATTTTGCATATGGCACATTGTATCAAAGTTCCCAATTTGGTTTTCTTTCTCTTTGGGCCCAAAATATGACGACTTCAAATCCGAATTTTATAGGCTATACAATTTAGAATATGCAAGTGATTTTGAGCAACAATGGGAAATAATGGTTTACAACCTTGATCTAAGTAAA 1251 0.3309 MTSQDNENWPIEFVRDFDVPSNDHDIEELQRDHLGHAEKTNDSTPYNGQIFNSEENAYIFYCLFAKRCGFSVRRGHTYKRNNSDNIEYIYRREFICHRAGIVNQQKIIEPEKQRKRKSSRCNCSAKLFISKRQINCEERWVVTYFSNSHNHALLDDKEVRFLPAYRDIPNNDQSRILLLSKAGCSISIIMRVLELEKGIEAGHLPYLEKDIRNFLQSESSVGNENDASDFLKLCKKLKDIDDVFQYDFTMDESNKLEHIIWVFGDSIRTYEAFGDVVVFDTTYRINRYDMPLGLWVGVDNHGNSIFFGCVLLRDEKIPSFRWALKTFLHFVKGKYPRTILTDQDHALKEAISTELSNTKHAFCIWHIVSKFPIWFSFSLGPKYDDFKSEFYRLYNLEYASDFEQQWEIMVYNLDLSK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1186 417 Pfam MULE transposase domain 276 369 IPR018289 -
Lal6g1186 417 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 25 411 - -
Lal6g1186 417 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 411 IPR031052 GO:0006355
Lal6g1186 417 Pfam FAR1 DNA-binding domain 60 154 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1186 Lal-Chr6 9250975 9252312 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal6g1186 FAR1 3.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1186 - - var:108339217 560.836