Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1139 ATGATTTCTCAAAGAGTTAACCATAACAGCCACTTTTTCAAGGTTATTCTTGAAAGTAACCTTCGCAATGGAGACCTGTTCAACGCGTCGATGCGTAAGGAACTAGTCACTTTCGGGACGAATGACTGTCTGGATACACCAAATAACAAAGATATTAGTCATAGGGTACCCAAAAGTTTTGTGAAGAAATATTGGAAAGGAATGAGAAACCCAATTTCTCTAAGGCTTCCAAATCTCACTGAATGGAAAGTTTATTGGATGAAACGTGGTGGTGATGTTTGGTTTCTAAATGGTTGGAAAGAATTTGCAGAGTACTTGTCTTTAGATGCAGCACAGTTTCTAATGTTTCAGCATGAAGGAAAATCTCAGTTTAAGGTTATAGTGTTTGGTAAAAGTGCCTTAGAAGTAAAATACCCTTTATCTATAGGTAATGATAAAAAAGTTGATGAGAGTGATTGTTCTTTGGAAACTGTTGTTGATGGTAAAAGGAAAAAATATTCATCATCTTCTCAATCTTGTAAGAAGATAAAAACAAACATTAAGGAAGAACCTGAATGCTATGATGAAAGGAAGAATGATGAGAAAAAAGCCTCTTCAGGTTTTGATATTGATGATATGAGCAAAGCTCTACTAGAGAAAGTGAAGAATACTTTCAGATCTAAGAATCACTTTTTCTTATGTATATGTCAGAGAACATACACTGAGAGGGATATTCTGAGTATACCGAAAGATTTTTTGGAACATCTGCGCAAGAAGGGTGGACATGGTACTCTTTCGGTTAAGGAGAGAAGTTGGGATGTCAGGATAAAGTTTTCTTCCTATAAACAAGCATTGCTTTGTGAAGGTTGGAGGACATTTTCCCAGGACAATAATTTGAAATTTGGTGATGTTTGTGCTTTTGTGTTAGACAAGCGTGAAGGAATTTCTTTCCAAGCTAGGAGAACATTGCAGTACTCTCTGCTGAAGAATATAGACTTCATCAGGGATTACATAATGAAAGAGGTGCAGCCTTGGGATTGGAGAACGGACCATGACATAAAAATGCTCTAA 1050 0.3648 MISQRVNHNSHFFKVILESNLRNGDLFNASMRKELVTFGTNDCLDTPNNKDISHRVPKSFVKKYWKGMRNPISLRLPNLTEWKVYWMKRGGDVWFLNGWKEFAEYLSLDAAQFLMFQHEGKSQFKVIVFGKSALEVKYPLSIGNDKKVDESDCSLETVVDGKRKKYSSSSQSCKKIKTNIKEEPECYDERKNDEKKASSGFDIDDMSKALLEKVKNTFRSKNHFFLCICQRTYTERDILSIPKDFLEHLRKKGGHGTLSVKERSWDVRIKFSSYKQALLCEGWRTFSQDNNLKFGDVCAFVLDKREGISFQARRTLQYSLLKNIDFIRDYIMKEVQPWDWRTDHDIKML 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1139 349 PANTHER B3 DOMAIN-CONTAINING 8 306 - -
Lal6g1139 349 SMART B3_2 44 132 IPR003340 GO:0003677
Lal6g1139 349 SMART B3_2 224 316 IPR003340 GO:0003677
Lal6g1139 349 SUPERFAMILY DNA-binding pseudobarrel domain 219 306 IPR015300 -
Lal6g1139 349 SUPERFAMILY DNA-binding pseudobarrel domain 53 132 IPR015300 -
Lal6g1139 349 Gene3D - 204 315 IPR015300 -
Lal6g1139 349 CDD B3_DNA 236 307 IPR003340 GO:0003677
Lal6g1139 349 Pfam B3 DNA binding domain 54 128 IPR003340 GO:0003677
Lal6g1139 349 Pfam B3 DNA binding domain 229 311 IPR003340 GO:0003677
Lal6g1139 349 ProSiteProfiles B3 DNA-binding domain profile. 224 316 IPR003340 GO:0003677
Lal6g1139 349 CDD B3_DNA 46 129 IPR003340 GO:0003677
Lal6g1139 349 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 306 - -
Lal6g1139 349 Gene3D - 4 133 IPR015300 -
Lal6g1139 349 ProSiteProfiles B3 DNA-binding domain profile. 56 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1139 Lal-Chr6 8654918 8657736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1139 55 302 B3 DNA Binding Superfamily AT3G18990 25.083 7.30e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal6g1139 B3 5.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1139 - - lang:109359551 499.975