Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1138 ATGACTTCCTCTGACCAGCCAAATAATATGCATCACAACACCAATGCAGTACTTTTTTTTAAGATTATTGTTACAACAACTCTCAATGTTGGAAACCTTAAAATCCCAAACAAATTCTCAAAGAAATATGGTGCTGGTTTACCAAACCCAGTGTTTCTCAAACCACCAGATGGTACTGAATGGAAAGTATATTGGACTAAACATGATGCTGAGATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTAGATACTACTCTCTAGATCATGGGCATATGGTGATGTTTGAATATAACAGAACTTCTCAATTTGTTGTGCACATCTTTGACAAAAGTGCTACTGAGATAGACTACATTTTCGATGTTAATCGTGGCCGAAAGGACAACCTTAATCAGATCGGTGAAGACGCTGTTAAAATTTTCGATGAGAAATCTCCATGTGAGAAGACTAGACTCAAATCAACAATGTCATCTCCTAATAGTGGTAAGATAGTGAAAACAAGCAGAATTAGAGATGTCGAAGGAAGCTCCGATCCAAAAAACTTGCATCATTGTGTCCAAGCTAAAGGTAGTCATTCTGAAGGTACAAACTTTGAGATGGCAATGGTTAATTCTGTCAAGCAAGAATTTGATGAGGACATGGTTGAAGGCAATTTTAGCACTGAATGCTCAAAAGCAGAACAATTAACTTTGAAAACTAATGAGACTTCAATCACAGCAACAACTTTCAGATCTAAAAACCCCCATTTCATTCTTGTCATGAAGACTTCCCATGTCAATGGATATTCCTTGAGAATACCAACAGAATTTGCAGAAAAATATTTGAAGAAAACAAAAGCGGTTGTTCACCTTCAGGTCATGGATGAGAGAACTTGGCCTGTTGTTTATGTTGTTCCCTCAATTACTACAGGATGGAATAAATTTGCATCAGATAATAATCTGAATATTGGAAATGTGTGTGTCTTTGAGCTGATCAAGAGGAAAGAAAACATTTCTTTCAAAGTATTTATATTTCGAGTTGCCGAAGAATCAAATTACCCTCTTTCAAAAGGTAAGAATGAAAACCAAAGTCAAACAATACCACTGTTGATCAGTCCCTGCTTAGGGATGATCAGACCTATGAAAGAAGCAGAGAAGTTCAATTCAGAGAATCCCATTTTCATAGTCAAAATAAAGCGAAGTTTTATGTCGAGAAACGGACCGAATATACCATTTCTATTTATCAGAAAGTACTTTGAAAAAAAGAAGCAAACTGTGATTATACAATTTGGAAAGAAACTGTGGCCTGTAAGTTTTCTCCACTATGAATACAGAAGTTCATGCCAGTTATCTTCTGGTTGGTCTCTATTTGCAGAAGAAAGTAAATTGGAAGCTGGTGATGTTTGTATTTTTGAGCTCATCTATAAAGAAATTGCAGTGTTTGGTGTTCATGTTTTCAGAGGCCAAGGTTAG 1449 0.3609 MTSSDQPNNMHHNTNAVLFFKIIVTTTLNVGNLKIPNKFSKKYGAGLPNPVFLKPPDGTEWKVYWTKHDAEIWFEKGWKEFARYYSLDHGHMVMFEYNRTSQFVVHIFDKSATEIDYIFDVNRGRKDNLNQIGEDAVKIFDEKSPCEKTRLKSTMSSPNSGKIVKTSRIRDVEGSSDPKNLHHCVQAKGSHSEGTNFEMAMVNSVKQEFDEDMVEGNFSTECSKAEQLTLKTNETSITATTFRSKNPHFILVMKTSHVNGYSLRIPTEFAEKYLKKTKAVVHLQVMDERTWPVVYVVPSITTGWNKFASDNNLNIGNVCVFELIKRKENISFKVFIFRVAEESNYPLSKGKNENQSQTIPLLISPCLGMIRPMKEAEKFNSENPIFIVKIKRSFMSRNGPNIPFLFIRKYFEKKKQTVIIQFGKKLWPVSFLHYEYRSSCQLSSGWSLFAEESKLEAGDVCIFELIYKEIAVFGVHVFRGQG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1138 482 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Lal6g1138 482 CDD B3_DNA 384 479 IPR003340 GO:0003677
Lal6g1138 482 ProSiteProfiles B3 DNA-binding domain profile. 248 340 IPR003340 GO:0003677
Lal6g1138 482 Gene3D - 11 112 IPR015300 -
Lal6g1138 482 Gene3D - 229 342 IPR015300 -
Lal6g1138 482 Gene3D - 369 481 IPR015300 -
Lal6g1138 482 PANTHER B3 DOMAIN-CONTAINING 11 339 - -
Lal6g1138 482 PANTHER B3 DOMAIN-CONTAINING 372 479 - -
Lal6g1138 482 SUPERFAMILY DNA-binding pseudobarrel domain 379 479 IPR015300 -
Lal6g1138 482 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Lal6g1138 482 SMART B3_2 249 340 IPR003340 GO:0003677
Lal6g1138 482 SMART B3_2 19 111 IPR003340 GO:0003677
Lal6g1138 482 SMART B3_2 385 481 IPR003340 GO:0003677
Lal6g1138 482 CDD B3_DNA 18 109 IPR003340 GO:0003677
Lal6g1138 482 Pfam B3 DNA binding domain 19 110 IPR003340 GO:0003677
Lal6g1138 482 Pfam B3 DNA binding domain 387 479 IPR003340 GO:0003677
Lal6g1138 482 Pfam B3 DNA binding domain 249 338 IPR003340 GO:0003677
Lal6g1138 482 CDD B3_DNA 247 338 IPR003340 GO:0003677
Lal6g1138 482 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 372 479 - -
Lal6g1138 482 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 339 - -
Lal6g1138 482 ProSiteProfiles B3 DNA-binding domain profile. 385 481 IPR003340 GO:0003677
Lal6g1138 482 SUPERFAMILY DNA-binding pseudobarrel domain 242 338 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1138 Lal-Chr6 8649679 8653590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1138 371 479 B3 DNA Binding Superfamily AT3G18990 33.636 1.92e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal6g1138 B3 4.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1138 - - lang:109359275 854.358