Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1134 ATGAAGCGTGACTTGTACGAAATCTCCGAAGATGAATGGGAAAACCACAACACCTCTTTCAAACCCTCTCGTGTTCTCAAAGCACCGCGACTTTCTTCTTCTTCCTCTTCTTCTTCGCGCCTTCCACCGCCTCCAATCGAGTCCTTCGCTTTTGGTTCCAATAATAAGCATAAGGTTTCCGATCACGGCGACGACGATTGCGTCGAAATCGCGCCGAATTCGACAATTTTCCGGGAAAGCAACGACGGCCTGGACGACCTGGAGGACGAAGACGTTGATGATTCAACTGCCGCCGCCACGCCGAACCGAGGCCGCCGGTTTATAATCAATGACGAGGATGATGACGTCAGCGATGGGGACGTTGAGGAAGTTTATGAGATAGAGTCCACTGAGGAGGAAGTGGAAGAGGTTGAGAATGTGAATGAAAATGATGTGGTTGGTAAAGCTTTGCATAAGTGCTCGAAAATTTCCACGGAGCTGAGAAAGGAACTGTTTGGTTCTTCTGGTACTGCTTGTGAAAGGTACTCGGAGGTGGAATCTTCTTCAGTGAAAATTGTCACTCAGGAGGATGTTGATGAAGCGTGCGGGTCTGAGGATTCAGATTTTCAGCCTCTGCTGAAGCCATATCAGCTAGTTGGTGTCAATTTTTTGCTTCTGTTGCATCGGAAGGGTATCGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACATTTGCACAACGATCCTGGTCCTCATCTTATAGTATGTCCCGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGTCCAACTTTCTCTGTTCTTCAATATCATGGGGCTGGACGAGCAGCATATTGCAAGGAGTTGAACTCCCTGTCCAAGGCAGGATTGCCTCCTCCATTTAATGTCCTTCTTGTGTGTTACTCACTTTTTGAACGACACAGTCCGCAGCAGAAAGATGATCGTAAAGTTTTGAAGCGTTGGAGGTGGAGCTGTGTGCTGATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTATAGGTGGAAAAATCTGATGTCTGTTGCACGAAACGCTAACCAGCGCTTGATGCTGACAGGGACACCTCTTCAGAATGACCTACATGAGTTATGGTCATTGTTGGAGTTTATGCTGCCTAATATTTTTGATAGTGAAGATGTTGACTTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTTGTCGTATGAAGTCCATCTTGGGGCCATTTATTTTGCGGCGTCTAAAATCTGATGTGATGCAGCAACTTGTTAAAAAAATACAGCAGGTTGAATATGTTGTTATGGAAAAGCAACAAGAACATGCTTATAAGGAAGCCATTGAGGATTATCGTGCTGTTTCACAAGCTCGGATTGCAAAGTGTTCTGACCTTAACTCCAAAAATGTTCATGCAGTCCTTCCTAAACGGCAGATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCACCCCTTGTTGATAAGGCGGATCTACAATGACGAAGATGTCATTCGCTTTGCAAGGAAGCTACATCCAGTAGGTGCTTTTGGTTATGAATGTACGTTGGACAGAGTTATAGAGGAACTTAAAAGTTACAATGATTTCTCTATTCACCGGCTTCTACTTCACTATGGTGTCAAGGATAAAAAGGGGATTCTTTCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCCTAGCAAAACTTCTTCCTTCACTAAAGAAGCGTGGCCATCGTGTCTTGATCTTCAGTCAGTGGACATCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGGTTTACCTACAAAAGGCTTGATGGAAGTACACAGGTAGCAGAGAGGCAAACAATAGTGGATACTTTCAATAATGATACTTCCATATTTGCATGCTTGCTTTCCACTAGAGCTGGAGGTCAAGGCTTGAATTTAACAGGAGCTGATACCGTCGTAATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCCGAAGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACCAAGGGAACGGTTGATGAAAATGTATACGAAATTGCAAAGAGAAAGCTGGTATTGGATGCTGCTGTCCTCGAGTCCGTAGATGTTGTTAATGAAGGTGACATGCCTGAGAAGACTATGGGAGAGATATTGTCTGCAATTTTGTTGAGTTAA 2268 0.4352 MKRDLYEISEDEWENHNTSFKPSRVLKAPRLSSSSSSSSRLPPPPIESFAFGSNNKHKVSDHGDDDCVEIAPNSTIFRESNDGLDDLEDEDVDDSTAAATPNRGRRFIINDEDDDVSDGDVEEVYEIESTEEEVEEVENVNENDVVGKALHKCSKISTELRKELFGSSGTACERYSEVESSSVKIVTQEDVDEACGSEDSDFQPLLKPYQLVGVNFLLLLHRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWERELKKWCPTFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPNIFDSEDVDLKKLLNAEDRDLICRMKSILGPFILRRLKSDVMQQLVKKIQQVEYVVMEKQQEHAYKEAIEDYRAVSQARIAKCSDLNSKNVHAVLPKRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPVGAFGYECTLDRVIEELKSYNDFSIHRLLLHYGVKDKKGILSDKHVMLSAKCRALAKLLPSLKKRGHRVLIFSQWTSMLDILEWTLDVIGFTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESVDVVNEGDMPEKTMGEILSAILLS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1134 755 Gene3D - 551 752 IPR027417 -
Lal6g1134 755 PANTHER SNF2/RAD54 HELICASE FAMILY 86 753 - -
Lal6g1134 755 Coils Coil 438 458 - -
Lal6g1134 755 MobiDBLite consensus disorder prediction 1 65 - -
Lal6g1134 755 MobiDBLite consensus disorder prediction 78 98 - -
Lal6g1134 755 MobiDBLite consensus disorder prediction 1 18 - -
Lal6g1134 755 CDD DEXHc_Snf 206 396 - -
Lal6g1134 755 MobiDBLite consensus disorder prediction 28 43 - -
Lal6g1134 755 Pfam Helicase conserved C-terminal domain 582 694 IPR001650 -
Lal6g1134 755 SMART helicmild6 611 694 IPR001650 -
Lal6g1134 755 SMART ultradead3 202 407 IPR014001 -
Lal6g1134 755 Pfam SNF2-related domain 225 512 IPR000330 GO:0005524|GO:0140658
Lal6g1134 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 397 IPR014001 -
Lal6g1134 755 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 86 753 - -
Lal6g1134 755 CDD SF2_C_SNF 572 705 - -
Lal6g1134 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 735 IPR027417 -
Lal6g1134 755 Gene3D - 179 457 IPR038718 -
Lal6g1134 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 585 735 IPR001650 -
Lal6g1134 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 432 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1134 Lal-Chr6 8524151 8534493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1134 204 721 RAD5 or RAD16-like Gene Family AT1G02670 26.964 9.34e-41 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal6g1134 SNF2_N 4.7e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1134 K14439 - gmx:100806323 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1134 6 8524151 8534493 Lal6g1134 6 8524151 8534493 ECH