Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1132 ATGGTAACAGATCCAGATGCTGAGGTAATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACTTACAGCTCCATAGAAGAGGTCACAACCTTCCTTGGAAGCTAAAGCAAAAGACAACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAACCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGGATTAAGAAACACTACTCTAGAAAGCATGGTGAGAAAAAGTGGAAGTGTGAGAAATGTTCTAAAAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGGCGTGATAGTTTCATCACTCATAGAGCCTTCTGTGATGCACTATCTCATGAGACTTCAAGACACCCTACAAACCTAAACCCTTTAGGAATTCATCATTTGTATGGTACAACAAACCACATGAGTTTAACTCTATCTCAAGTGGGCACTCAAATTTCCCACCTTCAAAACCAGAATCAAGAAACCTCTAATAGTATCTTGAGCCTTGGCAATGCTTCATTAGCAGCACCAAAATTTGAGCACATTATCTCCCCTTTGCATCATCAACAATTATCATATGGAGTATTTCAGTCACCACATTCAATGTCTCATAATAATTCCTCAGCTGGTTTTTTCATGAATGACCCAAATCAAAGATTTCATCAAGAACTTCAATCTCATCATCAACAAGGAACAATCTCAAACCACAAACAACTTTATAGTCTTATGCAACTTCCTGATCTTCAAGGCAACACCAACACCAACAACAACAACAACTCTACTTCTGCTCCTACTGATATGTTTAACCCCAGTTTCTTTCCAAATAGTAACAATAGTAGTGGAAGCATAATCTCTGATCAATTCAATAACATCAATGCAGCTTGTAACCAAGGAACAACACTTTACACAAATGATAGCCCTAGTAATCATCATCACTTTGGGTCTGATAATTTATCTTCACTCTTTGGAAATTCACCTTTGCAACAAGAAAGCATGTCTTCACATATGTCTGCCACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTTCAACCACAACAACCACCAATGCTTCTACTATGCTAAGAGGACTAGGTAGTTCCTCAAACAACAATGGTGTAGAATCTTTTGGAAGTGATAGTAGGGAAGAAGGTATAAGATCAAGCATGGAAAATGACCAGAACCATCATCATATCCATGGATTGATGAACTCTATTGTTAATGGAAACAATTCCATATATGGTAATGTGAAAGGGAATGAGAACAACCTTAGCCAGTTTCACAATGTGGAGGAACCTAATAAGTTATCTCAAAACATTGGTGTTTGCTTTGGTGGATCTGATAAATTGACATTAGACTTTTTGGGTGTTGGAGGAATGGTAAGAAACATGAGTGGCAGGTTTTCACAAAGAGAGCAACAACACTCTATGGATTCATTGAGTTCTTTGGATCCAAAAATGGAAAGCCAATCTTTTGGAAGATCAGCACCGCAATAA 1599 0.3896 MVTDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALSHETSRHPTNLNPLGIHHLYGTTNHMSLTLSQVGTQISHLQNQNQETSNSILSLGNASLAAPKFEHIISPLHHQQLSYGVFQSPHSMSHNNSSAGFFMNDPNQRFHQELQSHHQQGTISNHKQLYSLMQLPDLQGNTNTNNNNNSTSAPTDMFNPSFFPNSNNSSGSIISDQFNNINAACNQGTTLYTNDSPSNHHHFGSDNLSSLFGNSPLQQESMSSHMSATALLQKAAQMGSTTTTTNASTMLRGLGSSSNNNGVESFGSDSREEGIRSSMENDQNHHHIHGLMNSIVNGNNSIYGNVKGNENNLSQFHNVEEPNKLSQNIGVCFGGSDKLTLDFLGVGGMVRNMSGRFSQREQQHSMDSLSSLDPKMESQSFGRSAPQ 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1132 532 MobiDBLite consensus disorder prediction 396 412 - -
Lal6g1132 532 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 4 508 - -
Lal6g1132 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 508 - -
Lal6g1132 532 MobiDBLite consensus disorder prediction 396 424 - -
Lal6g1132 532 SMART c2h2final6 23 45 IPR013087 -
Lal6g1132 532 SMART c2h2final6 99 119 IPR013087 -
Lal6g1132 532 SMART c2h2final6 64 94 IPR013087 -
Lal6g1132 532 SUPERFAMILY beta-beta-alpha zinc fingers 22 119 IPR036236 -
Lal6g1132 532 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Lal6g1132 532 Gene3D Classic Zinc Finger 77 156 - -
Lal6g1132 532 MobiDBLite consensus disorder prediction 502 532 - -
Lal6g1132 532 Pfam Zinc-finger double-stranded RNA-binding 23 45 IPR022755 -
Lal6g1132 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Lal6g1132 532 Gene3D Classic Zinc Finger 3 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1132 Lal-Chr6 8498408 8502395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1132 6 500 IDZ Gene Family AT2G02070 47.637 9.98e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal6g1132 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1132 K25870 - gmx:102663407 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1132 6 8498408 8502395 Lal6g1132 6 8498408 8502395 ECH
Lal22g1014 22 8728664 8733482 Lal6g1132 6 8498408 8502395 LSH