Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1125 ATGGAAAAAGTAGCTCCTCCAATCTTCACCCACACAACAAAACTTCCAAGTTCATATCATGATTCATCTTCATCCATGACTATGAATAATAACAAGAAGCGTGATCTTTCATATGATTTGTTTCATAACCAAACATCTAACGAAACTTGGAACCCAAAGGCTTGGACTTGGGACAGTGTTAATTTTCTGAGCAAACCCTTGACCCAAAATAACAACAACCTCGTTGTTACTAATTCTAACAATAATAACAAAGAGGTTGTTGTTGATGAAACAGTATTAGAGTTGAATCTTGGTTGTGGTGAACCGGACCCAATAGTGGTTCGGCCTAATAAAAAAGTGCGGTCTGGTTCACCTTCTTCGGCTACGACGTCGTATCCTACGTGTCAGGTTGATAACTGTAGAGAAGATTTGTCAAGTGCTAAAGACTATCATCGCCGCCATAAAGTTTGTGAATTTCATAGCAAAGCCTCCAAATCACTTCTCTCTAATCAATTGCAAAGGTTTTGCCAACAGTGTAGCAGTGCACGAGACTTCGATTCTGGAAGTGTACTTGTATGCAGTCTTGCAAGAGGGAAAACTGTTTTCAGATTTCACCCACTGTCAGAGTTTGATGAAGGGAAGCGGAGTTGTAGGCGAAGACTTGCTGGGCATAATCGTCGAAGAAGAAAAACACAACAGGAAGATGTTACTTCACGGCCAGAGAATGTGACTGCAGGCAATGTGGAAATTTCTAGCTTGTTGACTGCAATAGCTCATTCGCAAGGGAAATTTGAGGAAATAAGCAAGATTAGCTCACAAGTTCCACAAGATAAAGATCATCTTGTTCAGATTCTTAATAGGTTGGCTTTGCCAGCTGATCTGGCCTCGAAGTTGCTCAATGTTGGTAATTTCAATGGCAATGTGCAAACTTCATCCTATGATCATGACAAACTGAACCAGAGCACCGCCCCATTAACTAAGAACCTACTTGCTGGTCTTTCGACCACTCTGTCGACATCTGCTCCGGATGCCACTGCATCGCTATCTCAAAATTGCAGCCAGAGTACTGACAGCGAGAAATCTAGGACTAGTGCTGAACAAATTGTTGAAACAAATTTACAAACAAGACAACCACTACTAGAATTCACTTCAGTTGGAGGAGAAAGAAGTAGTGGTAGCTCCCAGTCACCTGTTGAAGATTCGGACTGCCCAGAAGTTCGAGTCAATTTACCGTTGCAACTATTTAGCCGCTCTCCAGAAGATGAATGCCTTCCAAAAATGGTATCATCGCAAAAGTATGTTTCATCTGATAGCAGTAACCCTGTGGAAGAGAGGTCACTATCATCTTCTCCTCCCATCGTGGAGATGCAGTTTAATTTGAAGAGTGTGACAAGAGGTCTCAACCCTGAGAGCTTTTCAATTAGAAGAGAAATCGATGCAAACAAGGAAGCAATGCAAAGTCTTAGTTGTAATATCTCTCTTCATCTTTCCAATAGGTCAAATAGCAGAATCCAACCTGGTTCACTTCAAAGTGTACCATTTCAACCTCCTGGGTATGCATCTTCGGGCTCTGACCATTCACCTCCCAGTTTGAACTCAGATGCTCAGGATCGTACTGGGAGAATAATGTTTAAACTATTCGGCAAGGATCCTAGCCATTTCCCAGAAACACTGCGAACACAGATTTACAATTGGCTTTCTAGTAGGCCGTCAGACTTGGAGAGCCACATAAGGCCTGGCTGTGTCGTCTTATCAGTTTATGCTACAATGTCCTCTGCTGCCTGGAAGCAACTAGAAGAAAACTTCCTTCAATGTGTTCGTTCTTTAATTCAAAATTCAAATTCTGATTTTTGGAGGAATGGAAGGTTTCTGGTTCATTCTGGCAGTCGATTAGCGTCACATAAAGATGGAAAGATTCGCTTATGCAAACCATGGAGAATATGGAGATCTCCGGAGTTGATATCAGTGTCCCCTTTGGCAATTATTAGTGGTCAAGAAACCTCTATTTCATTGAAGGGTAGAAATCTGTCAACTCCAGGCACCAAGATTCATTGTACAGGTACTGGCCGTTACACATCGGAGGAAGTTATAGGATCTGCATATCATGGTAATACCTATGATAAGATAAAACTGAGTGGTTTTAAAGTTCAGAATGCATCTGGTGTTCTGGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGTGACAGCTTTCCAGTGATAATAGCTGATTCAACCATTTGTAAGGAATTGAGACTGCTTGAGTCTGAATTTTATTTGGAGGAAGAAGTATGCGATGCCATTTCTGATGAGAATGAAAATGATTATGGAAGGCCCAGATCTAGGGAGGAGGCTTTGCACTTCTTGAATGAGCTTGGCTGGCTGTTCCAGAGAGAAAGGTTTTCGAATGTGCATGAAGTGCAAGATTATTCGCTGGACAGGTTCAAGTTTGTACTCACGTTTGCTGTGGAAAGGAACTGTTGTATGTTAGTCAAAACCCTTCTGGATTCGCTGGTTGATAAACACTTAGAAGGGGAGTCATTGTCAGCGAGTTCAGCGAATATGCTTAATGCAATTCAACTCTTAAATAGAGCTGTGAAAAGAAAATACAGAAATATGGTTGATTTGCTTATCTGTTATTCGATACCCCTAAAAAATGAGACATCAAGAAGATATGTATTTCCTCCTAATGTTTGGGGCCAAGATGGAATTACACCTTTGCACTTGGCAGCATGCACATCAAATTCTGAGGGTGTAATTGACTCTTTAACCAATGATCCGCAGGAGATTGGGTTGAAGAGCTGGGAATCCCTAGTGGATGCAAATGGGCAGACTCCACATGCGTATGCCATGACGAGGAATAATCACTTTTACAACGTGCTGGTTGCTCGTAAGCGTGCTGATAAACAAAGAGGTCAAGTTTCATTAACAATGGACAATGAGATAGAACAATCATCACTGAGAATTGAGCTCAGGCAAAAGCAAGGTAACCAACTGAAGCGAGGTCAAAGTTCTTGTGCAAAGTGTGTGATGGCAGAGATTCATTCTTACAGGAAAGTTCCCGCTTCACGGGGATTTATCCGGCGTCCTTTTATCCATTCAATGCTAGCTGTTGCTGCTGTATGTGTATGTGTATGTCTGTTCATGCGCGGAGCCCCTTCCATAGGCTCAGTTGCTCCCTTCAGGTGGGAAAAAATGGATTATGGCACACATTAG 3198 0.4203 MEKVAPPIFTHTTKLPSSYHDSSSSMTMNNNKKRDLSYDLFHNQTSNETWNPKAWTWDSVNFLSKPLTQNNNNLVVTNSNNNNKEVVVDETVLELNLGCGEPDPIVVRPNKKVRSGSPSSATTSYPTCQVDNCREDLSSAKDYHRRHKVCEFHSKASKSLLSNQLQRFCQQCSSARDFDSGSVLVCSLARGKTVFRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQQEDVTSRPENVTAGNVEISSLLTAIAHSQGKFEEISKISSQVPQDKDHLVQILNRLALPADLASKLLNVGNFNGNVQTSSYDHDKLNQSTAPLTKNLLAGLSTTLSTSAPDATASLSQNCSQSTDSEKSRTSAEQIVETNLQTRQPLLEFTSVGGERSSGSSQSPVEDSDCPEVRVNLPLQLFSRSPEDECLPKMVSSQKYVSSDSSNPVEERSLSSSPPIVEMQFNLKSVTRGLNPESFSIRREIDANKEAMQSLSCNISLHLSNRSNSRIQPGSLQSVPFQPPGYASSGSDHSPPSLNSDAQDRTGRIMFKLFGKDPSHFPETLRTQIYNWLSSRPSDLESHIRPGCVVLSVYATMSSAAWKQLEENFLQCVRSLIQNSNSDFWRNGRFLVHSGSRLASHKDGKIRLCKPWRIWRSPELISVSPLAIISGQETSISLKGRNLSTPGTKIHCTGTGRYTSEEVIGSAYHGNTYDKIKLSGFKVQNASGVLGRCFIEVENGFKGDSFPVIIADSTICKELRLLESEFYLEEEVCDAISDENENDYGRPRSREEALHFLNELGWLFQRERFSNVHEVQDYSLDRFKFVLTFAVERNCCMLVKTLLDSLVDKHLEGESLSASSANMLNAIQLLNRAVKRKYRNMVDLLICYSIPLKNETSRRYVFPPNVWGQDGITPLHLAACTSNSEGVIDSLTNDPQEIGLKSWESLVDANGQTPHAYAMTRNNHFYNVLVARKRADKQRGQVSLTMDNEIEQSSLRIELRQKQGNQLKRGQSSCAKCVMAEIHSYRKVPASRGFIRRPFIHSMLAVAAVCVCVCLFMRGAPSIGSVAPFRWEKMDYGTH 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1125 1065 MobiDBLite consensus disorder prediction 422 443 - -
Lal6g1125 1065 Gene3D - 797 991 IPR036770 -
Lal6g1125 1065 Gene3D - 123 211 IPR036893 GO:0003677|GO:0005634
Lal6g1125 1065 ProSiteProfiles Ankyrin repeat profile. 896 929 IPR002110 GO:0005515
Lal6g1125 1065 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 180 IPR044817 GO:0003677
Lal6g1125 1065 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 195 1064 IPR044817 GO:0003677
Lal6g1125 1065 MobiDBLite consensus disorder prediction 214 235 - -
Lal6g1125 1065 MobiDBLite consensus disorder prediction 377 393 - -
Lal6g1125 1065 ProSiteProfiles Zinc finger SBP-type profile. 125 224 IPR004333 GO:0003677
Lal6g1125 1065 SUPERFAMILY SBT domain 126 227 IPR036893 GO:0003677|GO:0005634
Lal6g1125 1065 MobiDBLite consensus disorder prediction 497 528 - -
Lal6g1125 1065 MobiDBLite consensus disorder prediction 334 359 - -
Lal6g1125 1065 MobiDBLite consensus disorder prediction 377 396 - -
Lal6g1125 1065 Pfam SBP domain 128 176 IPR004333 GO:0003677
Lal6g1125 1065 Pfam SBP domain 196 223 IPR004333 GO:0003677
Lal6g1125 1065 SUPERFAMILY Ankyrin repeat 812 959 IPR036770 -
Lal6g1125 1065 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 195 1064 - -
Lal6g1125 1065 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 35 180 - -
Lal6g1125 1065 MobiDBLite consensus disorder prediction 421 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1125 Lal-Chr6 8404279 8410373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1125 3 1064 SBP-box Gene Family AT1G20980 48.455 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal6g1125 SBP 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1125 - - lang:109360589 1845.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1008 22 8673074 8678657 Lal6g1125 6 8404279 8410373 LSH