Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1101 ATGGATGAAATGAATTGTAGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAAAGTGCCTTGGTGACTCATCCCGAGGATGCTCCAGATCGATGGGAGAAGATTGCGGCTGATGTACCAGGGAAAACTATAGAAGAAATTAAACAGCATTATGAGCTGTTGGTTGAAGATGTTAACCAGATCGAATCTGGTTGTGTGCCTTTACCCTCTTATAATTCTTCGCCAGAGGGCTCAGCAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGAGTGGCCATCATAATAGTGATTCTAATCATGGAACTAAGGCAGATCAGGAACGGAGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGCAAGATTTACCGTTGTTTCTTAGTGACCATGAGGTCACAGGTTCGAATCCAGACCCCACTAAGTGGGAGTCTCGTGCATTGGGTCGCCCTTTTTATGTGTTTGTTTTGTACTTTTGTTCATCCAAAGAATGCTCTTCTTGGGCCTGTGGGTGCCCCCCGTCACTAGATTGGAGCCTACGAGATTTCCAAACAAGCCACTCAGGGCAGAGACAGTTCCATATGCTAAAGCTTTTTCATTTTATTTTAAAATATTGGTTGAACAGGTTATTTCTTCTTGGCTTAGAAAAGTATGGAAAAGGTGATTGGCGAAGTATATCGAGGAACTTTGTGGTGACAAGAACCCCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCCAGCATACACGATATTACCAATGTTAATAATAATGGAGATGTTTCAGCATCTCAAGCACCAATTACTGGCCAAACAAATGGTTCTGCAGGAAATTCTACTGGAAAATCAGGCAAACAAGCACCTCCAGCCTCAACCGGGGTACCAAGCGTCGGAATATATGCTGCTCCTACCATCGGACAACCTGTAGGAGGACCCCTAGTATCTGCTGTTGGAACCCCGGTTAATCTTTCTGCCCCTGGACACATGGCATACGGTGTCCGAGCCCCGGTTCCTGGTGCACCGATGAATATTGTTCCAATAACATACCCGATGTCACAGACATCTGCTCCTCATAGGTGA 1119 0.4522 MDEMNCSSEWSWEQDKAFESALVTHPEDAPDRWEKIAADVPGKTIEEIKQHYELLVEDVNQIESGCVPLPSYNSSPEGSASHASDEGAGKKSGHHNSDSNHGTKADQERRKGIAWTEDEHRQDLPLFLSDHEVTGSNPDPTKWESRALGRPFYVFVLYFCSSKECSSWACGCPPSLDWSLRDFQTSHSGQRQFHMLKLFHFILKYWLNRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNNGDVSASQAPITGQTNGSAGNSTGKSGKQAPPASTGVPSVGIYAAPTIGQPVGGPLVSAVGTPVNLSAPGHMAYGVRAPVPGAPMNIVPITYPMSQTSAPHR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1101 372 MobiDBLite consensus disorder prediction 87 110 - -
Lal6g1101 372 CDD SANT 209 247 IPR001005 -
Lal6g1101 372 SUPERFAMILY Homeodomain-like 207 252 IPR009057 -
Lal6g1101 372 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Lal6g1101 372 Pfam Myb-like DNA-binding domain 209 247 IPR001005 -
Lal6g1101 372 MobiDBLite consensus disorder prediction 265 303 - -
Lal6g1101 372 MobiDBLite consensus disorder prediction 265 305 - -
Lal6g1101 372 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Lal6g1101 372 SMART sant 6 58 IPR001005 -
Lal6g1101 372 SMART sant 202 249 IPR001005 -
Lal6g1101 372 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 249 IPR006447 GO:0003677
Lal6g1101 372 MobiDBLite consensus disorder prediction 67 110 - -
Lal6g1101 372 ProSiteProfiles SANT domain profile. 209 251 IPR017884 -
Lal6g1101 372 CDD SANT 9 56 IPR001005 -
Lal6g1101 372 Gene3D - 208 253 - -
Lal6g1101 372 Gene3D - 4 69 - -
Lal6g1101 372 MobiDBLite consensus disorder prediction 67 81 - -
Lal6g1101 372 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 208 359 - -
Lal6g1101 372 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 5 122 - -
Lal6g1101 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 251 IPR017930 -
Lal6g1101 372 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Lal6g1101 372 PANTHER TRANSCRIPTION FACTOR KUA1 208 359 - -
Lal6g1101 372 PANTHER TRANSCRIPTION FACTOR KUA1 5 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1101 Lal-Chr6 8161131 8165040 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal6g1101 Myb_DNA-binding 5.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1101 - - nnu:104591730 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0975 22 8167626 8173771 Lal6g1101 6 8161131 8165040 LSH
Lal6g1101 6 8161131 8165040 Lal18g0518 18 4290051 4292847 LSH